 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Tp57577_TGAC_v2_mRNA17410 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
| Family | B3 | ||||||||
| Protein Properties | Length: 1418aa MW: 159573 Da PI: 5.7651 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 33.1 | 1e-10 | 738 | 829 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 7 psdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
+s + ++rl +p+++++++ ++ +++++ l d sgr+++ k+ ++k ++yv ++Wk+Fv +n+Lk +D v+F +
Tp57577_TGAC_v2_mRNA17410 738 SSAAAGKSRLNFPREYTRNCLMN--SDRKIYLIDvASGRVYNSKIFTsgQNKENKYV-YSCWKQFVTENKLKFRDKVIFNATT- 817
566667789********999666..5568*****99*********656566666665.66********************653. PP
SEE..EEEEE-S CS
B3 88 sefelvvkvfrk 99
+ v+++r+
Tp57577_TGAC_v2_mRNA17410 818 GDNVIQVQILRR 829
566678888776 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd04480 | 2.80E-15 | 278 | 364 | No hit | No description |
| SuperFamily | SSF50249 | 1.29E-5 | 280 | 370 | IPR012340 | Nucleic acid-binding, OB-fold |
| Gene3D | G3DSA:2.40.50.140 | 5.2E-4 | 295 | 364 | IPR012340 | Nucleic acid-binding, OB-fold |
| Pfam | PF02721 | 5.7E-7 | 301 | 370 | IPR003871 | Domain of unknown function DUF223 |
| CDD | cd04481 | 2.55E-8 | 397 | 491 | No hit | No description |
| SuperFamily | SSF50249 | 1.4E-8 | 527 | 649 | IPR012340 | Nucleic acid-binding, OB-fold |
| PROSITE profile | PS50863 | 10.8 | 732 | 830 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 0.0075 | 732 | 830 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 4.95E-6 | 737 | 827 | No hit | No description |
| Pfam | PF02362 | 8.0E-8 | 742 | 829 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 2.3E-9 | 742 | 829 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 7.65E-9 | 745 | 829 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF52540 | 5.17E-20 | 900 | 1124 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF05970 | 8.7E-143 | 934 | 1296 | IPR010285 | DNA helicase Pif1-like |
| SuperFamily | SSF52540 | 5.21E-43 | 1071 | 1148 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 1.3E-27 | 1073 | 1138 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 1.3E-27 | 1176 | 1224 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 5.21E-43 | 1197 | 1229 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 5.21E-43 | 1263 | 1414 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 1.3E-27 | 1333 | 1387 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000723 | Biological Process | telomere maintenance | ||||
| GO:0006281 | Biological Process | DNA repair | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003678 | Molecular Function | DNA helicase activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1418 aa Download sequence Send to blast |
MNRTESNPSD KLKNFIGDLK IKNLQDLLIC KENGTFVVVA WFESVVEGID VWYPDSSVKD 60 KPRFRMKVMV KDGEKFAVFC LFDEEVEYLA IETCPLLAAM GESCSLFPFE MDCMYGDGVL 120 YKVEKIESEK DLGFPQFKVI SICNEVVVVN EFIDQYITSV LDISPKLSSA STFSDDSSEV 180 SNYLDFSVQF HGHGCVPDVS TAVDNHVDSS HSKLKLCLSG NGLGVDHTEN LTGAMFLGSR 240 LGKRKIDVAF ANAGKENVEK HSKNDNVKVG GNAAGEYQLR VLRKWSVFNS VFPGNVESVD 300 MVMIDRNGHK IQATIPNLLL CLFDNLIDEG NVYVLSNLSV TYNLHEILGS YNRYMLVFNV 360 NTKVNLSSSS SIAHYGMSLI GSDNVLQLSE RFKYLVDVIG VITFIRHNKN YFDDGTISTT 420 VSFKLTDHRN SYDCELCGDY VDLFRVLMEN QPLGLPIVVL QFAKITMQQG SIVVQSVDHV 480 TRLYVNPVIH ESIQFKTGLI LALNQTRRLL GNCPTDKSVG FRFDVSYQFK TISELMDDPQ 540 TGIFIVNARI VDMIELNPWW YPVCRCDIIV ESYLGAYFCE NCHATEFSAV PKYRVKMVLE 600 DETGACFIEA YDHVMLPISL VDPNNPILPE AFFPRAFDSV MGKSIVLILH KTVHIDKFLD 660 PVYEVRCVSD DPQVMNFYAS IGLCRIPSKV VPNLIDPECN LMKKKVYRPP VTSTERLLDE 720 YLGPVYRRNP PCDDAESSSA AAGKSRLNFP REYTRNCLMN SDRKIYLIDV ASGRVYNSKI 780 FTSGQNKENK YVYSCWKQFV TENKLKFRDK VIFNATTGDN VIQVQILRRR RRSSRAACSY 840 EDENALQADF TNNRKFRSSE VVDFVMSHED LKESCLIEID NYLRANGKSL EDYECMPKLK 900 EQNNGIFNNI LLENEFNYDY DDMRILHNEH VGNLNSEQLF AYEDIYKAVD NGLGSMFFVD 960 GYGGTGKTFL WKTLSYKLRS EGKIVVNVAS SGIASILLPG GKTAHSQFGI PLVLTKESCC 1020 QIDKGSKKAQ LLIMTSLIIW DEAPMINKWA FEAFERTLRD IMSEVDVKNK SLPFGGKTVV 1080 FGGDFIQILP VIPKGSRADI VHATINSSYL WRKCKVLRLT KNMRLQFSSN SVENEQLREF 1140 SSWILDIGDG KIGITEDGES IVEIPQDILV KSSLNPIGDI VEAIYPNLLE NIYVPDFFQD 1200 RAILAPTLDV VEEINDYVLA LMPGDAKEYL SCDSISKGDD DVGVDLRWIT TEFLNEIKCS 1260 GMPNHKLNIK VGAVIMLLRN IDVSSGLCNG TRLIVFYMGN IVIGAKIVTG TNIGDIVYIS 1320 RMSLVPSDAN VSISFRRRQF PFCVCFAMTI NKSQGQTLSH VGLYLPRPVF THGQLYVAVS 1380 RVKTRAGLKI LIVGDDGLAK TSTINVVYPE VFQRICR* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5fhh_A | 2e-21 | 954 | 1391 | 22 | 395 | ATP-dependent DNA helicase PIF1 |
| 5fhh_B | 2e-21 | 954 | 1391 | 22 | 395 | ATP-dependent DNA helicase PIF1 |
| 6hph_A | 2e-21 | 954 | 1391 | 19 | 392 | ATP-dependent DNA helicase PIF1 |
| 6hpq_A | 2e-21 | 954 | 1391 | 19 | 392 | ATP-dependent DNA helicase PIF1 |
| 6hpq_B | 2e-21 | 954 | 1391 | 19 | 392 | ATP-dependent DNA helicase PIF1 |
| 6hpt_A | 2e-21 | 954 | 1391 | 19 | 392 | ATP-dependent DNA helicase PIF1 |
| 6hpu_A | 2e-21 | 954 | 1391 | 19 | 392 | ATP-dependent DNA helicase PIF1 |
| 6hpu_B | 2e-21 | 954 | 1391 | 19 | 392 | ATP-dependent DNA helicase PIF1 |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Tp57577_TGAC_v2_mRNA17410 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF10 | 2 | 3 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Tp57577_TGAC_v2_mRNA17410 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|