PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17499
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 276aa    MW: 32452.8 Da    PI: 10.243
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17499genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.31.6e-261059251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               rien + rqvtfskRr+g++KKA+ELS+LCda+v +i+fsst kly+y+s
  Tp57577_TGAC_v2_mRNA17499 10 RIENLTSRQVTFSKRRKGLMKKAKELSILCDAQVGLILFSSTHKLYDYAS 59
                               8***********************************************86 PP
2K-box62.71.4e-211041611370
                      K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                                + + +q+e+a L+++++ L  +qR+l+G++L+sL++ eL++Le+qLe slk+iR++K 
  Tp57577_TGAC_v2_mRNA17499 104 DVKFWQREAASLRQQLQHLNDSQRQLMGQELSSLDFDELRHLEHQLEMSLKSIRKRKV 161
                                5789****************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.249161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-26263IPR002100Transcription factor, MADS-box
CDDcd002651.87E-35297No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-19104161IPR002487Transcription factor, K-box
PROSITE profilePS5129712.118105244IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGRGKIVIRR IENLTSRQVT FSKRRKGLMK KAKELSILCD AQVGLILFSS THKLYDYASS  60
RYVLTNKQSF SDEKFTNKFV MESVIERYNK LMEDRHQAVD PTLDVKFWQR EAASLRQQLQ  120
HLNDSQRQLM GQELSSLDFD ELRHLEHQLE MSLKSIRKRK VFVRIQVVKF IVMISMNYTX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXQIGEE NAELEKVIGA  240
RRREYATTNP SYSTRISYGY DEPISLQLRQ PQPQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18190194MEF2C
5f28_B4e-18190194MEF2C
5f28_C4e-18190194MEF2C
5f28_D4e-18190194MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17499
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445643e-67AC144564.12 Medicago truncatula clone mth2-17n4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637616.19e-83MADS-box transcription factor 23
SwissprotQ6VAM46e-57MAD23_ORYSJ; MADS-box transcription factor 23
TrEMBLA0A396ICW32e-81A0A396ICW3_MEDTR; Putative transcription factor MADS-MIKC family
STRINGXP_004504870.11e-64(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.16e-57AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  3. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]