PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA17572

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 229aa MW: 27252 Da PI: 10.0388

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA17572	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.6	1.5e-11	71	129	37	90
FAR1 37 kegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHela 90 +eg+ + + + +ke+r+r+++r++Cka+l+++++k ++w+vtk++ eHnH+l Tp57577_TGAC_v2_mRNA17572 71 REGSVSLKIIDPSKEQRKRESSRCECKAHLRISLQKsldifPSEWRVTKFVAEHNHDLL 129 5666666666678999****************9977666689***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-9	71	129	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MRMVTRKQLL SNLIMLLWQI LFLLLVKFFL VKKKHLPFIR DMHINMGSQF EKVDSSIKME 60 LLADVIFFFH REGSVSLKII DPSKEQRKRE SSRCECKAHL RISLQKSLDI FPSEWRVTKF 120 VAEHNHDLLT QPEVRFLPAY RTILEEDHGR IFLLKEGGLS VRQIMRVIEL EKNVKHGYLP 180 FIEKDIRNLF LKANKQIERS DVMNLLKYFE YAKESSSNFQ YAYTIDKEG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA17572

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024630878.1	2e-81	protein FAR1-RELATED SEQUENCE 11-like
TrEMBL	A0A072UI16	1e-80	A0A072UI16_MEDTR; FAR1 DNA-binding domain protein
TrEMBL	A0A2K3N750	1e-81	A0A2K3N750_TRIPR; Protein FAR1-related sequence 11-like
STRING	AES62383	1e-78	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15165	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	3e-42	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA17572