PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17616
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 423aa    MW: 46179.5 Da    PI: 6.6347
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17616genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20189238255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Tp57577_TGAC_v2_mRNA17616 189 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 238
                                7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-14189238IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22189247IPR016177DNA-binding domain
SMARTSM003805.3E-38189252IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-33189247IPR001471AP2/ERF domain
PROSITE profilePS5103225.712189246IPR001471AP2/ERF domain
PRINTSPR003671.2E-11190201IPR001471AP2/ERF domain
CDDcd000187.74E-15197248No hitNo description
PRINTSPR003671.2E-11212228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
LLHVIDITVA DQRDLGKFVR LKEEHGGDKE EGEEKEKEEA SRIHGLNKQK YEEVAMSCPP  60
TSTTHGLGQA QNEWVQQQGS GYFPMMMSGF VPVSSSSNSP RMYSSSSSSS SSWVGHKRGR  120
EENDSVGVGA SSSHQDMNTI HRNIADFRLP TSHGNSSSSA TEATTPTSTS NATQSAATNE  180
EETGEKRRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFD TAEAAARAYD EAALRFRGNR  240
AKLNFPENVT STRPNFPANT STVSNFPTTL YSPAPPQQPQ QMQIQTQTQP SFVQFQGTSD  300
LLRDYYQYSQ ILKGSGDFQG LEQWFYESQM PSIHSSSSLL SPLPSLSLSS SSSPTPFSPS  360
SQLSSVSLPL FPGQQMEFFR PPEDQSHSGG YGGGPGGSHF PPSWSDTGGY HHPPPPPPPS  420
SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23186251268ATERF1
3gcc_A2e-23186251268ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189EKRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17616
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1509781e-104AC150978.15 Medicago truncatula clone mth2-66m17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189819.11e-109ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A2U8UG381e-127A0A2U8UG38_TRIRP; Ethylene-responsive transcription factor ERF110 (Fragment)
STRINGAES623261e-107(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-23ethylene response factor 110