PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17645
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 259aa    MW: 28736.2 Da    PI: 4.912
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17645genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.61.3e-13176234361
                                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                                + +r+rr++kNRe+A rsR+RK+a++ eLe+ + +Le+eN +L ke  e kke  k  +
  Tp57577_TGAC_v2_mRNA17645 176 AQQRQRRMIKNRESAARSRERKQAYQVELETLAVKLEEENYKLLKEKAERKKERLKQLM 234
                                679*************************************9998887777777665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000418.7E-5105120IPR001630cAMP response element binding (CREB) protein
Gene3DG3DSA:1.20.5.1703.7E-12171236No hitNo description
PRINTSPR000418.7E-5173189IPR001630cAMP response element binding (CREB) protein
SMARTSM003385.4E-10174238IPR004827Basic-leucine zipper domain
PfamPF001704.5E-12176234IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.599176228IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.02E-8178229No hitNo description
CDDcd147076.55E-17178224No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
PRINTSPR000418.7E-5191211IPR001630cAMP response element binding (CREB) protein
PRINTSPR000418.7E-5211228IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MASSKLMPSS NSINSDQPSS PSSKSHFTTT NFLPISDNSP FLNDQPSLAD AVATPRTVDD  60
VWREIVAGDN RECKEEISDE MMTLEDFLVK AGAVDDEDEG DDDVKMTIPL SETLSGSGMF  120
SLDPSFQGIE SVEGSVIGFG NGNVNGNGNG NGVEVVEGGG RGKRGRPVLE QLDKAAQQRQ  180
RRMIKNRESA ARSRERKQAY QVELETLAVK LEEENYKLLK EKAERKKERL KQLMENVIPV  240
VEQRRPPRLL RRVRSLQW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17645
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496457.11e-129G-box-binding factor 4-like
RefseqXP_004496458.11e-129G-box-binding factor 4-like
SwissprotP427779e-55GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A2K3PKQ61e-138A0A2K3PKQ6_TRIPR; G-box-binding factor 4-like protein
STRINGXP_004496457.11e-128(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.17e-25bZIP family protein