PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17654
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family CAMTA
Protein Properties Length: 694aa    MW: 76448.4 Da    PI: 4.7769
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17654genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.12.2e-55151312117
                       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycy 84 
                                ++e ++rwlk+ e++ iL+n+e++++t+e++++p+sgsl+L+nr+++r+fr+DG+ w+kk+dg++v E+he+LKvg+ve+++cy
  Tp57577_TGAC_v2_mRNA17654  15 YQEaQRRWLKPAEVMYILQNHEQYQFTQEPPQQPTSGSLFLFNRRVLRFFRRDGHAWRKKRDGRAVGEAHERLKVGNVEAINCY 98 
                                566699****************************************************************************** PP

                       CG-1  85 YahseenptfqrrcywlLeeelekivlvhylev 117
                                Yah+e+nptfqrr+yw+L+ ++++ivlvhy+++
  Tp57577_TGAC_v2_mRNA17654  99 YAHGEQNPTFQRRSYWMLDPAFDHIVLVHYRDT 131
                                ******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.79811137IPR005559CG-1 DNA-binding domain
SMARTSM010766.4E-7614132IPR005559CG-1 DNA-binding domain
PfamPF038593.3E-4817130IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.4E-8403491IPR013783Immunoglobulin-like fold
PfamPF018333.2E-8405488IPR002909IPT domain
SuperFamilySSF812961.38E-17405489IPR014756Immunoglobulin E-set
CDDcd001021.37E-4405490No hitNo description
Gene3DG3DSA:1.25.40.207.7E-16599693IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.653600694IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.66E-16601692IPR020683Ankyrin repeat-containing domain
CDDcd002041.53E-13605692No hitNo description
PfamPF127965.4E-8615692IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.06633665IPR002110Ankyrin repeat
SMARTSM002480.0038633662IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MTISIGLEYN INDLYQEAQR RWLKPAEVMY ILQNHEQYQF TQEPPQQPTS GSLFLFNRRV  60
LRFFRRDGHA WRKKRDGRAV GEAHERLKVG NVEAINCYYA HGEQNPTFQR RSYWMLDPAF  120
DHIVLVHYRD TSEGRLSSGP GTQLSPGSSS AYSQSPSSYS NHNPGSTSII DDSYEPNQSF  180
YSPVSAEVTS ANSGMSHSEG TEAESGTSAD LKITQVLRRL EVQLSLNEDN FEEIAPFRNE  240
HEVTHDSIAQ NHQAVICKQE ESAALSGPDD QGLLYDGYNG RQGDNGESYR ELLDHDFPDG  300
NEKALSWKNV YIPAGNESSP SSSIREPVTN LEDDCWANFN TNNAGNSVFS LPQAVGGVTL  360
PPYSSMVETQ EASSGYYATL FNPSQIGASH DAGSSLTVSQ KQKFTIKAVS PGWGYASETT  420
KVYIIGSFLC HPSNSAWACM LGDVEVPVEI IQDGVMCCEV PSHIPGKVTL CITSGNRESC  480
SEVREFEYRD KTESYTHYTP SETEASRTPE ELLLLVRFGQ MLLSASSVSN DNNESGIFIK  540
QKADDNSWSH IIEALLFGSG TSSGTINWLL EELLKDKLQV WLTYRSREID EETGCSLSKK  600
EQGIIHMVAG LGFEWALNPI LSCGVNINFR DINGWTALHW AARFGREKMV ASLIASGASA  660
GAVTDPSAQD PTGKTAASIA SSSGHKGLAG YLSE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17654
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446586.20.0calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2K3P0M90.0A0A2K3P0M9_TRIPR; Calmodulin-binding transcription activator 4-like protein
STRINGXP_004504403.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]