PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17655
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family CAMTA
Protein Properties Length: 970aa    MW: 107768 Da    PI: 5.7836
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17655genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.43.6e-55151312117
                       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycy 84 
                                ++e ++rwlk+ e++ iL+n+e++++t+e++++p+sgsl+L+nr+++r+fr+DG+ w+kk+dg++v E+he+LKvg+ve+++cy
  Tp57577_TGAC_v2_mRNA17655  15 YQEaQRRWLKPAEVMYILQNHEQYQFTQEPPQQPTSGSLFLFNRRVLRFFRRDGHAWRKKRDGRAVGEAHERLKVGNVEAINCY 98 
                                566699****************************************************************************** PP

                       CG-1  85 YahseenptfqrrcywlLeeelekivlvhylev 117
                                Yah+e+nptfqrr+yw+L+ ++++ivlvhy+++
  Tp57577_TGAC_v2_mRNA17655  99 YAHGEQNPTFQRRSYWMLDPAFDHIVLVHYRDT 131
                                ******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.79811137IPR005559CG-1 DNA-binding domain
SMARTSM010766.4E-7614132IPR005559CG-1 DNA-binding domain
PfamPF038595.4E-4817130IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.2E-8404492IPR013783Immunoglobulin-like fold
CDDcd001021.44E-4406491No hitNo description
PfamPF018335.0E-8406489IPR002909IPT domain
SuperFamilySSF812962.18E-17406490IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.209.9E-16600695IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.512601693IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.42E-16602695IPR020683Ankyrin repeat-containing domain
CDDcd002042.55E-13606693No hitNo description
PfamPF127965.7E-8616694IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0038634663IPR002110Ankyrin repeat
PROSITE profilePS5008811.06634666IPR002110Ankyrin repeat
SMARTSM0001589751773IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.895752781IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.58E-7799857IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.6809831IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.968810839IPR000048IQ motif, EF-hand binding site
PfamPF006120.02812830IPR000048IQ motif, EF-hand binding site
SMARTSM000154.2E-4832854IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.359833858IPR000048IQ motif, EF-hand binding site
PfamPF006123.0E-5835854IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 970 aa     Download sequence    Send to blast
MTISIGLEYN INDLYQEAQR RWLKPAEVMY ILQNHEQYQF TQEPPQQPTS GSLFLFNRRV  60
LRFFRRDGHA WRKKRDGRAV GEAHERLKVG NVEAINCYYA HGEQNPTFQR RSYWMLDPAF  120
DHIVLVHYRD TSEGRLSSGP GTQLSPGSSS AYSQSPSSYS NHNPGSTSII DDSYEPNQSF  180
YSPVSAEVTS ANSGMSHSEG TEAESGTSAD LKITQVLRRL EVQLSLNEDN FEEIAPFRNE  240
HEVTHDSIAQ NHQAVICKQE ESAALSGPDD QGLLYDGYNG RQGDNGESYR ELLDHDFPDG  300
NEKALSWKNV YIPAGNQESS PSSSIREPVT NLEDDCWANF NTNNAGNSVF SLPQAVGGVT  360
LPPYSSMVET QEASSGYYAT LFNPSQIGAS HDAGSSLTVS QKQKFTIKAV SPGWGYASET  420
TKVYIIGSFL CHPSNSAWAC MLGDVEVPVE IIQDGVMCCE VPSHIPGKVT LCITSGNRES  480
CSEVREFEYR DKTESYTHYT PSETEASRTP EELLLLVRFG QMLLSASSVS NDNNESGIFI  540
KQKADDNSWS HIIEALLFGS GTSSGTINWL LEELLKDKLQ VWLTYRSREI DEETGCSLSK  600
KEQGIIHMVA GLGFEWALNP ILSCGVNINF RDINGWTALH WAARFGREKM VASLIASGAS  660
AGAVTDPSAQ DPTGKTAASI ASSSGHKGLA GYLSEVALTS HLSSLTLKES ELSKSSAELQ  720
ADLTVSNVSK ENIAFSEDRA SLKDSLAAVR NTTQAAARIQ AAFRSHSFRK RRAKETNAVM  780
SGHDISASSF GDMPELYAMS KLAFRNSRES NSAALSIQKK YRGWKGRKDF LSLRQKVVKI  840
QAHVRGYQVR KHYKVLWAVG ILDKVVLRWR RKGVGLRGFK PEVAVNENEE EDEDEDILKV  900
FRKQKVDGEI DKAVSRVLSM VKSPDAREQY HRMLEKYRQA KAELAQTSEE KSLTTSIEDY  960
LNMDDDDFY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17655
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629208.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2K3P0M90.0A0A2K3P0M9_TRIPR; Calmodulin-binding transcription activator 4-like protein
STRINGXP_004504403.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]