PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA17745

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 375aa MW: 41127.9 Da PI: 4.7621

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA17745	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.5	2.9e-45	7	136	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya..tgkrknratksg 81 pGfrF+Pt el++++Lk+kv gkk++ +vi+e+diyk+ PwdLp k +++++ ewyfF++ +kk+ +g r nrat+ g Tp57577_TGAC_v2_mRNA17745 7 IPGFRFRPTGVELLKYFLKRKVMGKKFHN-DVIAEIDIYKHAPWDLPfKsYLQNGDLEWYFFCPISKKHGsgSGGRLNRATEIG 89 79**********************999.99***********6346667778******99833467***** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +Wkatgkd+ v + ++++vg+ ktLvf++g+ap+g +tdWvmheyrle Tp57577_TGAC_v2_mRNA17745 90 FWKATGKDRVVQH-NNQTVGMIKTLVFHTGKAPRGDRTDWVMHEYRLE 136 *****9999.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-53	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	51.105	6	158	IPR003441	NAC domain
Pfam	PF02365	1.8E-23	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MAITNMIPGF RFRPTGVELL KYFLKRKVMG KKFHNDVIAE IDIYKHAPWD LPFKSYLQNG 60 DLEWYFFCPI SKKHGSGSGG RLNRATEIGF WKATGKDRVV QHNNQTVGMI KTLVFHTGKA 120 PRGDRTDWVM HEYRLEDKDL VDRGIVQDSY VICKVFQKEG LGPRNGAQYG RPFNEEDWSD 180 DEVGLPFSES AAPVPGLAVT TTNSSVLNDA VYSCQTGLIS SPDAVYSCQT GLVASPDAVR 240 SCETGLIPFP DPANSCQMRL MLPSPDPVNS CQIGSMPSSQ MGLMMPSPDP VNSCQIGSMP 300 LDPANSYQTG WMPSSDPANS CQTGLMPSSD PANHSYPDNQ AVNNDDILSM LDIFNDSVIF 360 PEENIAEGAL LSXX*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MAITNMIPGF RFRPTGVELL KYFLKRKVMG KKFHNDVIAE IDIYKHAPWD LPFKSYLQNG  60
DLEWYFFCPI SKKHGSGSGG RLNRATEIGF WKATGKDRVV QHNNQTVGMI KTLVFHTGKA  120
PRGDRTDWVM HEYRLEDKDL VDRGIVQDSY VICKVFQKEG LGPRNGAQYG RPFNEEDWSD  180
DEVGLPFSES AAPVPGLAVT TTNSSVLNDA VYSCQTGLIS SPDAVYSCQT GLVASPDAVR  240
SCETGLIPFP DPANSCQMRL MLPSPDPVNS CQIGSMPSSQ MGLMMPSPDP VNSCQIGSMP  300
LDPANSYQTG WMPSSDPANS CQTGLMPSSD PANHSYPDNQ AVNNDDILSM LDIFNDSVIF  360
PEENIAEGAL LSXX*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-41	8	159	19	166	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-41	8	159	19	166	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-41	8	159	19	166	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-41	8	159	19	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-40	8	159	22	169	NAC domain-containing protein 19
3swm_B	1e-40	8	159	22	169	NAC domain-containing protein 19
3swm_C	1e-40	8	159	22	169	NAC domain-containing protein 19
3swm_D	1e-40	8	159	22	169	NAC domain-containing protein 19
3swp_A	1e-40	8	159	22	169	NAC domain-containing protein 19
3swp_B	1e-40	8	159	22	169	NAC domain-containing protein 19
3swp_C	1e-40	8	159	22	169	NAC domain-containing protein 19
3swp_D	1e-40	8	159	22	169	NAC domain-containing protein 19
4dul_A	9e-41	8	159	19	166	NAC domain-containing protein 19
4dul_B	9e-41	8	159	19	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA17745

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572255.2	1e-129	NAC domain-containing protein 82-like
Swissprot	Q9FY82	7e-80	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A2K3PMY6	0.0	A0A2K3PMY6_TRIPR; NAC domain-containing protein
STRING	AET04736	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3302	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	9e-84	NAC domain containing protein 103

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA17745

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]