PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA17814

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 292aa MW: 33580.6 Da PI: 8.424

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA17814	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.1	1.6e-44	45	175	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksg 81 ppGfrF Pt+eelv++yL++k++g+++ +++vi+ +di+ veP++Lp+ +++++++w+fFs+ ++++a+g r+nr+t+ g Tp57577_TGAC_v2_mRNA17814 45 PPGFRFFPTEEELVSFYLNNKLQGQTNYIDRVIPVIDINGVEPSNLPTlageLCREDKEQWFFFSPGQEREARGGRPNRTTACG 128 9**************************999***********546654455777********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+ v+s++++++g+kkt+vfy+g+ap+g+kt+W m+eyr+ Tp57577_TGAC_v2_mRNA17814 129 YWKATGSPGYVYSSDNKVIGVKKTMVFYEGKAPSGKKTKWKMNEYRA 175 *******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-47	38	199	IPR003441	NAC domain
PROSITE profile	PS51005	47.035	44	201	IPR003441	NAC domain
Pfam	PF02365	3.3E-24	45	174	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MVLLQRHFLA PITVWKFLPS IYSKKKTRNQ VQYSIQFNSM EDLFPPGFRF FPTEEELVSF 60 YLNNKLQGQT NYIDRVIPVI DINGVEPSNL PTLAGELCRE DKEQWFFFSP GQEREARGGR 120 PNRTTACGYW KATGSPGYVY SSDNKVIGVK KTMVFYEGKA PSGKKTKWKM NEYRAIQVSN 180 QSNTATPQLR REFSLCRVYV ISGSFRAFDR RPLEKKRVNQ LQVNHEINQN PISANQATQM 240 DASSSFENSH LHSAQMQEDV GSSNSTNWDV NNNDNDNDVD FQSLWEWDGV W*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	44	199	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	44	199	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	44	199	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	44	199	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	44	199	20	166	NAC domain-containing protein 19
3swm_B	2e-32	44	199	20	166	NAC domain-containing protein 19
3swm_C	2e-32	44	199	20	166	NAC domain-containing protein 19
3swm_D	2e-32	44	199	20	166	NAC domain-containing protein 19
3swp_A	2e-32	44	199	20	166	NAC domain-containing protein 19
3swp_B	2e-32	44	199	20	166	NAC domain-containing protein 19
3swp_C	2e-32	44	199	20	166	NAC domain-containing protein 19
3swp_D	2e-32	44	199	20	166	NAC domain-containing protein 19
4dul_A	2e-32	44	199	17	163	NAC domain-containing protein 19
4dul_B	2e-32	44	199	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA17814

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT051766	0.0	BT051766.1 Medicago truncatula clone MTYF5_F6_F7_F81G-H-6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013455804.1	1e-146	NAC domain-containing protein 90
Swissprot	Q9FMR3	4e-82	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2Z6MC51	1e-150	A0A2Z6MC51_TRISU; Uncharacterized protein
STRING	XP_004506197.1	1e-131	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-83	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA17814

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]