PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17830
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YB
Protein Properties Length: 136aa    MW: 15088.1 Da    PI: 8.2132
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17830genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.72.7e-13699795
                      NF-YB  7 flPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
                                lP + v r++k  l +   ++ i+  kda     e +  fi ++++ a+d c++ kr+ in++d++ al +  f ++v plk+ l
  Tp57577_TGAC_v2_mRNA17830  6 DLPKTIVRRVVKDKLSTcsdDGDIAvhKDALLAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEETEFTEFVSPLKASL 91
                               5788889999998886422244444338999999**************************************************** PP

                      NF-YB 88 kkyreleg 95
                               +++r+ ++
  Tp57577_TGAC_v2_mRNA17830 92 EEFRKKNA 99
                               ****8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-316128IPR009072Histone-fold
SuperFamilySSF471132.19E-247118IPR009072Histone-fold
PfamPF008084.0E-9775IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MAETEDLPKT IVRRVVKDKL STCSDDGDIA VHKDALLAFS ESARIFIHYL SATANDICRE  60
SKRQIINAED VFKALEETEF TEFVSPLKAS LEEFRKKNAG KKAAVSKGKG DEKGNEKKKK  120
RKLEKGEPSD KGDDQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115122EKKKKRKL
2116121KKKKRK
3117122KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17830
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182771e-132JQ918277.1 Medicago truncatula nuclear transcription factor Y subunit B4 (NF-YB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506183.12e-74DNA polymerase epsilon subunit 3
TrEMBLA0A2K3LWD21e-91A0A2K3LWD2_TRIPR; DNA polymerase epsiion subunit 3-like protein
STRINGXP_004506183.17e-74(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-41nuclear factor Y, subunit B11