PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18010
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 191aa    MW: 22428.8 Da    PI: 9.595
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18010genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.2e-293383151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               +ri+nk+nrqvtfskRr g+lKKA+ELSvLCdaeva+iifss gkl+ ys+
  Tp57577_TGAC_v2_mRNA18010 33 ERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSLGKLFQYST 83
                               69***********************************************96 PP
2K-box34.96.6e-13101155357
                      K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqq 57 
                                 s++++l e++++sl+qel  L+ + e+L r+qR +lGe+L+ L +k+Lq++e+q
  Tp57577_TGAC_v2_mRNA18010 101 MSENNDLGEQESQSLHQELLMLRVKHESLARTQRIFLGEELNALGIKDLQSIEKQ 155
                                467788***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.8382585IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-372584IPR002100Transcription factor, MADS-box
CDDcd002652.49E-382696No hitNo description
SuperFamilySSF554553.66E-3126102IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-292747IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002781IPR002100Transcription factor, MADS-box
PfamPF003191.8E-243481IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-294762IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-296283IPR002100Transcription factor, MADS-box
PfamPF014867.0E-8109155IPR002487Transcription factor, K-box
PROSITE profilePS512977.352112190IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MLRSELTNER EREREREREK KESRMGRGKV VLERIQNKIN RQVTFSKRRS GLLKKAFELS  60
VLCDAEVALI IFSSLGKLFQ YSTTDLNKII EKYRQCCFNN MSENNDLGEQ ESQSLHQELL  120
MLRVKHESLA RTQRIFLGEE LNALGIKDLQ SIEKQXXXXX XXXXXXXXXX XXXXXTQMLH  180
QHWGLTIIEK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-252593169MEF2C
5f28_B1e-252593169MEF2C
5f28_C1e-252593169MEF2C
5f28_D1e-252593169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8842881e-136AY884288.1 Pisum sativum MADS box protein M3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592353.34e-82MADS-box transcription factor 17 isoform X3
RefseqXP_024625534.11e-81MADS-box transcription factor 17 isoform X2
SwissprotQ7XUN22e-50MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A396JX646e-80A0A396JX64_MEDTR; Putative transcription factor MADS-MIKC family
TrEMBLA0A3Q7Y9V04e-80A0A3Q7Y9V0_CICAR; MADS-box transcription factor 17-like isoform X4
STRINGXP_004496628.12e-79(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.17e-48AGAMOUS-like 6
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]