PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA18029

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 252aa MW: 28854.1 Da PI: 8.4986

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA18029	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	84	135	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ h e+E++RR+++ + + Lr+llP ++ ++K s ++ + v+YI+++ Tp57577_TGAC_v2_mRNA18029 84 KKMVHREIEKQRRQEMATLHASLRSLLPIRF--IKGKRSLSDQMNEGVNYINHM 135 6889***********************65..*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.05E-9	83	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.70E-4	83	140	No hit	No description
PROSITE profile	PS50888	11.128	83	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-5	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-7	84	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
LTKPNMFPLQ RCNELSIPLS NSLNHHPQHH KIPQDLILDD CDSLVFDFTH KQMSISRPPK 60 ILLYTPPPED HNTNLNYIKD VNNKKMVHRE IEKQRRQEMA TLHASLRSLL PIRFIKGKRS 120 LSDQMNEGVN YINHMKKNIK ELSDKRDELK KLSNLSNLKN HTVSCCFSIH KNNGTVGIEI 180 SNFRDQEGVP LSKLLEQLMK VGLEVVSCFS IEVNGRLLHS VQCEVIDSDS VDLSELKRKF 240 SNMNPSFSCS D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA18029

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003592388.2	1e-119	transcription factor bHLH118 isoform X2
TrEMBL	G7ID49	1e-118	G7ID49_MEDTR; Putative transcription factor bHLH family
STRING	XP_004496640.1	1e-112	(Cicer arietinum)
STRING	AES62639	1e-112	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	5e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA18029