PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18036
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 878aa    MW: 100651 Da    PI: 6.2329
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18036genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.53.4e-2675161188
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                kfYn+YA+ +GF+vrk+  ++sk +g +++r+f+Cskeg+r+++k++ ++ +++r+etrtgC a++ ++++ dgk++vt++e +
  Tp57577_TGAC_v2_mRNA18036  75 KFYNKYARLMGFNVRKDWVNRSKVHGMVVSRKFTCSKEGYRRKDKRD-DNVKKHRKETRTGCLAHMIITRQPDGKYQVTHFEGQ 157
                                6*******************************************999.9999******************************** PP

                       FAR1  85 HnHe 88 
                                HnH+
  Tp57577_TGAC_v2_mRNA18036 158 HNHD 161
                                ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-2375161IPR004330FAR1 DNA binding domain
PfamPF105512.3E-25287381IPR018289MULE transposase domain
PROSITE profilePS5096610.2567603IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-5578605IPR006564Zinc finger, PMZ-type
PfamPF044347.3E-4580602IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MDGDRNKLGN VHEENVDVGP ETSNNLDLNV EQNSSSPNVV HANGSQSGVA SVNVVCSNAI  60
LGIGTVFESD EHAYKFYNKY ARLMGFNVRK DWVNRSKVHG MVVSRKFTCS KEGYRRKDKR  120
DDNVKKHRKE TRTGCLAHMI ITRQPDGKYQ VTHFEGQHNH DDINSINSNM LLLELQNEIN  180
VAQAVEVDSN NNLEPKSRSA LSMVNKKLDA RDSLDQLSMN YDNYLHSVRE RDISKGEAGR  240
LLGYFQRQHF ENPTFFHAIQ LDVDDKVTNV FWADDNMVAD YDHFGDVVCL DTTCRTNRVM  300
RPFVQFLGVN HHKQVLIFAA AFLYDETIES FNWLFRTFIG AMSGKKPKAI ITEQDATIIE  360
AVNTVLPETN RYTCVWQMYE NTLKHLSYFV KDAESFANDL RSCIYDPKDE EEFAHAWEAM  420
LQKYNLQQNE WLRWMYRERE KLAVFFGQNT FFVDVKGFHL GEVLSRKLRS YLNPDLDVVQ  480
FCNHFERVVD EQRYKEIEAD DEMKGCFPKL MGNVVMLKHA SVAYTPRAFE VFQQRYEKSL  540
NVLVNQHNVD GSLFEYKVNT FGQARQYSVT FNSLDDTVVC SCMKFEHVGF LCSHALKVLD  600
YRNIKVVPSR YILERWTKDA RLANIREIKH CKMQDNPKLV VASCYKDLCH RLVKLSARAS  660
ESVEAYQFAV RQLDEVMEGV QKILILKGEE EDASESAPAE IFRNGHATED QDVSNRVSGE  720
IDRSATQDIA QTTVNYNQTD SDRILNAEVH PPNTVVCISS PSSPYVSSQS VTPNSLLQGL  780
FGFEANQVVQ CMYEQPDLVL NHQSNTNLFQ PPNYYSNQQS SPCRSHLSQV PIIQNTYHES  840
MPSNNQTRQG MDLDIQNPHS ESCIMLPTLH NVLKDHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18036
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494940.0AC149494.4 Medicago truncatula clone mth2-116m7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625341.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X1
TrEMBLA0A2K3NX110.0A0A2K3NX11_TRIPR; Protein FAR1-related sequence 5-like
STRINGAES625520.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-100FAR1-related sequence 5