PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18047
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 346aa    MW: 39039.2 Da    PI: 7.8857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18047genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12172217555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h  +Er+RR+++ ++f  L  l+P++     kK++Ka++L +A++Y+k+++
  Tp57577_TGAC_v2_mRNA18047 172 HIVAERKRREKLSQRFIALSALVPNL-----KKMDKASVLGEAIRYLKQME 217
                                8899**********************.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.726167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-17171230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-16172230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9172217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-11172221No hitNo description
SMARTSM003535.0E-13173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSSHMEISST RGLPELGLIE DPNFLHHWNN HLNSIDTNNL TASAFGDALQ KHFLSNNPNF  60
NNKTCMETSP TGSERPVKQL KNNSWNYNNS PQTSETQYAN SCSNNLLSFA DSNYENQLGM  120
LKPKSEMVCP KIDNNSTLAN MFGNQNHVFK AFQEAKDIET TRPNKLSQAH DHIVAERKRR  180
EKLSQRFIAL SALVPNLKKM DKASVLGEAI RYLKQMEEKV SVLEEEKKRK KSVESVVIVK  240
KSQLSTTNDA DSSDNTTFDD TLPEIEARFC ERSVLIRLHC LKSQGVIEKT ISEIEKLHLK  300
VINSSALTFG NFTLDITIIA QMDVGFCMTL KDLVRKLRSE YSSSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14171227864Transcription factor MYC2
5gnj_B2e-14171227864Transcription factor MYC2
5gnj_E2e-14171227864Transcription factor MYC2
5gnj_F2e-14171227864Transcription factor MYC2
5gnj_G2e-14171227864Transcription factor MYC2
5gnj_I2e-14171227864Transcription factor MYC2
5gnj_M2e-14171227864Transcription factor MYC2
5gnj_N2e-14171227864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERKRRE
2176181RKRREK
3226230KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18047
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1308001e-127AC130800.24 Medicago truncatula clone mth2-36b7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593344.20.0transcription factor bHLH25
SwissprotQ9T0722e-53BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A396J1450.0A0A396J145_MEDTR; Putative transcription factor bHLH family
STRINGAES635950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-40bHLH family protein