PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18180
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 304aa    MW: 33071.4 Da    PI: 7.3662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18180genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-202676256
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                               ++ GVr+++ +grWvAeI+d s   ++ r +lg+++t+eeAa+a+++a+++l+ge
  Tp57577_TGAC_v2_mRNA18180 26 RFIGVRQRP-SGRWVAEIKDSS---QHVRLWLGTYDTPEEAARAYDEAARALRGE 76
                               578******.7*********42...35**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.3E-342689IPR001471AP2/ERF domain
CDDcd000185.53E-322685No hitNo description
Gene3DG3DSA:3.30.730.104.4E-282683IPR001471AP2/ERF domain
PROSITE profilePS5103220.3632683IPR001471AP2/ERF domain
PfamPF008475.4E-152676IPR001471AP2/ERF domain
PRINTSPR003673.0E-72738IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-202784IPR016177DNA-binding domain
PRINTSPR003673.0E-74965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAGAEATKYA SVTNNITKSK KPNMRRFIGV RQRPSGRWVA EIKDSSQHVR LWLGTYDTPE  60
EAARAYDEAA RALRGENART NFAVATSIDN TTPCSDDQGL ITSSISNEGK NNSLTFASLK  120
AKLSKNLQSI MARTSDHSNN KFSKSRVSDH FTFASIFNRR NNYNQISALD MKSIEKVVQP  180
SIIVPSIEPS SVSDCSSEWF GSFQNHGLDS DGSDIVENNN VNVSVGDQGF LDQLMGWIDD  240
DTSDICEGSS SKRFKVSSSV LVPPTFSSSP YDCGSPYSGY ASPYNSCGSP CNGYASPYYG  300
SKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1526821471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444945.20.0ethylene-responsive transcription factor RAP2-2
TrEMBLA0A2K3N9L10.0A0A2K3N9L1_TRIPR; Ap2/erf domain-containing transcription factor
STRINGXP_004510866.11e-170(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-17related to AP2 11