PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18181
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 297aa    MW: 34355.6 Da    PI: 7.8673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18181genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.22.6e-21115174258
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                dDg++WrKYGqK++++s+++r+YYrCt++   +C ++k+v r ++ p + ++tY g+H++
  Tp57577_TGAC_v2_mRNA18181 115 DDGHQWRKYGQKKINNSQYSRNYYRCTHKydqRCLATKQVHRIQQKPPLYKTTYYGHHTC 174
                                7***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-22103175IPR003657WRKY domain
SuperFamilySSF1182902.35E-21109175IPR003657WRKY domain
PROSITE profilePS5081118.774109172IPR003657WRKY domain
SMARTSM007745.4E-30114176IPR003657WRKY domain
PfamPF031066.2E-22115174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEEDHGKAME EVMRGCEYAH KLKQLLMINT NNLTTIFVEH LVNNILNSFN NVLFLLDKHS  60
KIQKNFSSIA PIIRSVDLEK SCKVMSTSTT RGSCYKRRRN TTQTWEEVTK IPTDDDGHQW  120
RKYGQKKINN SQYSRNYYRC THKYDQRCLA TKQVHRIQQK PPLYKTTYYG HHTCGKYMSN  180
PHIILDPNIH TNSSILLSFN NTFPNPTKQE CPLLSTSPSL SSSPNSLEYK DDFPSSSLDD  240
NLLSPKFTLD NSISTRHVST ISSTLDEFDH KDMMYGFSND FVEFDDDFFH PFNGFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-20115174968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18181
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4171974e-48EU417197.1 Trifolium repens clone CloverSSR-051_F07_027_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444938.11e-110probable WRKY transcription factor 63
TrEMBLA0A072TQ591e-109A0A072TQ59_MEDTR; WRKY transcription factor
STRINGAET011544e-86(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.16e-29WRKY DNA-binding protein 62