PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA18280

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WRKY

Protein Properties

Length: 187aa MW: 20504.5 Da PI: 6.1348

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA18280	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	44.2	3.9e-14	1	36	23	58
EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 sYYrCt gC+vkk++ersa++ +vv + Yeg+H h Tp57577_TGAC_v2_mRNA18280 1 SYYRCTAIGCEVKKRIERSATEASVVLTSYEGNHIH 36 8*********************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	16.099	1	39	IPR003657	WRKY domain
SMART	SM00774	9.6E-6	1	38	IPR003657	WRKY domain
Pfam	PF03106	2.0E-8	1	36	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	5.1E-11	1	39	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-10	1	39	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
SYYRCTAIGC EVKKRIERSA TEASVVLTSY EGNHIHYSPE RMHAANFGMM HNPSGFQEQI 60 HQHQNITSGV GDAVVGNQVA MSQYQQYQQF LDQNQNERQQ QQPVPSLLYN NDYNNSFNTA 120 PPVSVVNSAD NFMDSSASFG GLLQNQVNYG EDNLVRNHGG LLQDMIVPMK GGARAGVRVG 180 DGTSST*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA18280

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003609797.2	1e-71	probable WRKY transcription factor 23
TrEMBL	A0A2K3PDB0	1e-120	A0A2K3PDB0_TRIPR; WRKY transcription factor
STRING	AES91994	5e-71	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21193	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	4e-13	WRKY DNA-binding protein 48

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA18280