PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA1833

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 177aa MW: 19932.9 Da PI: 6.6419

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA1833	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.1	1.3e-42	18	117	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+ Tp57577_TGAC_v2_mRNA1833 18 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQK 102 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q+++l+++la++++e Tp57577_TGAC_v2_mRNA1833 103 QVSELQTQLAKAQAE 117 *********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.898	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-42	18	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MFYSSRYHTP DQNRDISPCA ACKILRRRCV EKCVLAPYFP PTDPLKFTIA HRVFGASNII 60 KFLQELPEPQ RADAVSSMVY EANARIRDPV YGCAGAICQL QKQVSELQTQ LAKAQAEIVN 120 MHCQQANLVA LICMEMSNQS SPQDHNMIIN QPQPHVDMSC FLEDNNFGSA WEPLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	17	125	10	118	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	17	125	10	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA1833

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC144484	1e-145	AC144484.5 Medicago truncatula clone mth2-30o16, complete sequence.
GenBank	AC152818	1e-145	AC152818.17 Medicago truncatula clone mth2-85g12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003591977.1	1e-111	LOB domain-containing protein 1
Swissprot	Q9LQR0	4e-71	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2K3PP50	1e-117	A0A2K3PP50_TRIPR; LOB domain-containing protein
STRING	AES62228	1e-110	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-73	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA1833