PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18333
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 544aa    MW: 63906.2 Da    PI: 8.7661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18333genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34e-14956148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+W+++Ede+l+++v+++G++ W++  r  g+ R +++c++rw+++l
  Tp57577_TGAC_v2_mRNA18333  9 KGPWSKQEDEILIKYVERYGPEKWNLLQRVTGLPRKGNSCRLRWLNHL 56
                               79******************************88************97 PP
2Myb_DNA-binding23.81e-0762103145
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                +g+ ++eE ++++++ +qlG + W  I + ++ gRt++++k++++
  Tp57577_TGAC_v2_mRNA18333  62 KGKLSEEEKQKIIQL-RQLGIN-WFEIVKQLP-GRTDNEIKNFYN 103
                                68889********97.9***99.*********.**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.493460IPR017930Myb domain
SuperFamilySSF466892.82E-217102IPR009057Homeodomain-like
SMARTSM007172.9E-13858IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-201063IPR009057Homeodomain-like
CDDcd001672.54E-91156No hitNo description
PfamPF139218.2E-151272No hitNo description
SMARTSM007172.3E-761108IPR001005SANT/Myb domain
PROSITE profilePS5129410.80961110IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-1464107IPR009057Homeodomain-like
CDDcd001671.43E-666103No hitNo description
PROSITE profilePS5096610.484492528IPR007527Zinc finger, SWIM-type
PfamPF044347.0E-6504524IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
LIMEKKLRKG PWSKQEDEIL IKYVERYGPE KWNLLQRVTG LPRKGNSCRL RWLNHLNPYL  60
KKGKLSEEEK QKIIQLRQLG INWFEIVKQL PGRTDNEIKN FYNINERKKH KMESGNRECQ  120
KKKKKIKYLS LNEENKARDN ELNNNGECSN QQQGISDTHQ MEIMKDSFHI PIMQPSNMLC  180
NNVPSTSTVN NSSPTIIDRG EAPFMPTDMV SNVPLFQEFQ SSESPLHPYT SISDKPSPIF  240
IDRNETSFIS KDMESNLPLF PESMNFESFE SLIQKYPPLP LRSSEEIQRE QLELDSPFNN  300
NLMXXXXXXX XXXXXCETRL IDENGMKPTY LKKDESNNED LIDLLDSLVR KCMLGDYEIG  360
EFKLKWAQVV DSIGLKDNNW IKETYAKRKT WAITHIRGQM FAGFRTTLRY KGLHFELGKF  420
VNSRYNLSDF LLHFHRCLNY MRCKEVEADF ASDYGEPIII QRSSSMTING FKETRGYKIY  480
ELTKYRKPEK VWRVSFNRDG DILKCSCQRM ESFGIPCEHI IALLVFRHYV ELPKSLVLNR  540
YTY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-24210920127MYB TRANSFORMING PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106124RKKHKMESGNRECQKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18333
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1064933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-31myb domain protein 27