PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18374
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ZF-HD
Protein Properties Length: 249aa    MW: 27758.3 Da    PI: 8.1782
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18374genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.31.8e-284699458
                ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                                ++keClkNhA s+Gg+a+DGC+Ef+p+ +eeg+++  kCaAC CHRnFHR+e++
  Tp57577_TGAC_v2_mRNA18374 46 SNFKECLKNHASSIGGYAIDGCCEFLPA-SEEGSIEFYKCAACSCHRNFHRKETV 99
                               689************************9.8889*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.8E-254798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.9E-244897IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-174898IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.9764897IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.88E-17175246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-27178246IPR009057Homeodomain-like
TIGRFAMsTIGR015658.0E-24185241IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEIEEKNDEI VMSTKADTVT INSSRMKTST QVEKSPVYVQ NNSIKSNFKE CLKNHASSIG  60
GYAIDGCCEF LPASEEGSIE FYKCAACSCH RNFHRKETVV VPEDVTPLLF NNPCQLSPST  120
PFKAYYHTSN GNHHVTRASR GTGTTLALPS SDGAHISRGG AEENVHVHHD LEHIQGCGEG  180
SSNSKKRFRT KFTTKQKEMM LDFAITLGWK IQKKDGNIVE EFCKQIGVQR HVFNIWIHNN  240
KHTLGKMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-191862431875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18374
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596393.22e-70zinc-finger homeodomain protein 1
TrEMBLA0A2K3PD950.0A0A2K3PD95_TRIPR; ZF-HD homeobox-like protein
STRINGAES666447e-70(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-45homeobox protein 22