PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18393
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 269aa    MW: 30716.1 Da    PI: 8.9522
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18393genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-313484151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Tp57577_TGAC_v2_mRNA18393 34 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 84
                               79***********************************************96 PP
2K-box97.52e-32109199999
                      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                                 +ea + s+qqe+ kLk+++e+Lqr+qR+l+GedL++Ls k+L+ Le+qL++slk+iRs++++++l+q+ +lq+ke+ l e+n+
  Tp57577_TGAC_v2_mRNA18393 109 SKEALELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANR 192
                                455666789*************************************************************************** PP

                      K-box  93 aLrkkle 99 
                                aLr+++e
  Tp57577_TGAC_v2_mRNA18393 193 ALRQRME 199
                                ***9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-412685IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.4872686IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-3327102IPR002100Transcription factor, MADS-box
CDDcd002651.95E-4427101No hitNo description
PRINTSPR004041.1E-322848IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002882IPR002100Transcription factor, MADS-box
PfamPF003191.8E-263582IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-324863IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-326384IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.059114204IPR002487Transcription factor, K-box
PfamPF014863.9E-26116198IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MYDLPTTRRV HLLKRIGEQV LCSEKMGRGR VELKRIENKI NRQVTFAKRR NGLLKKAYEL  60
SVLCDAEVAL IVFSNRGKLY EFCSTSSMLK TLERYQKCNY GAPEANVSSK EALELSSQQE  120
YLKLKARYES LQRSQRNLMG EDLGPLSSKD LETLERQLDS SLKQIRSTRT QFMLDQLGDL  180
QRKEHLLCEA NRALRQRMEG YQINSLQLNL SAEDMGYGRH HHQVHNQGDD LFQPIECQPT  240
LQIGYQGDPG SVVTAGPSMN NFMGGWLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-451001981101Developmental protein SEPALLATA 3
4ox0_B6e-451001981101Developmental protein SEPALLATA 3
4ox0_C6e-451001981101Developmental protein SEPALLATA 3
4ox0_D6e-451001981101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000269|PubMed:9869431}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18393
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2233180.0AJ223318.1 Pisum sativum mRNA for MADS-box transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601749.11e-166MADS-box transcription factor 1 isoform X2
SwissprotO658741e-167MTF1_PEA; MADS-box transcription factor 1
TrEMBLG7JBE51e-165G7JBE5_MEDTR; MADS-box transcription factor
STRINGAES720001e-166(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-126MIKC_MADS family protein
Publications ? help Back to Top
  1. Buchner P,Boutin JP
    A MADS box transcription factor of the AP1/AGL9 subfamily is also expressed in the seed coat of pea (Pisum sativum) during development.
    Plant Mol. Biol., 1998. 38(6): p. 1253-5
    [PMID:9869431]