PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA18620

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 219aa MW: 23998 Da PI: 8.1361

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA18620	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.8	5e-45	31	129	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+k+l++l +++reda++sl+yeAear+rdPvyG+vg i+ lq Tp57577_TGAC_v2_mRNA18620 31 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQ 114 7********************************************************************************* PP DUF260 85 qqleqlkaelallke 99 +q+++l++el+++++ Tp57577_TGAC_v2_mRNA18620 115 RQVQRLQKELDSANA 129 ********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.786	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-44	31	128	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MRSIDKFYDT IYCFFFSAGK TMASSSSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPQKF 60 ANVHKIFGAS NVTKILNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SFLQRQVQRL 120 QKELDSANAD LLRFAYNDSS LPPLPPLVVP ASFHHHHHHQ QLTPQRQLQF GSRFGNGGNI 180 DGSGFYSFPY AIPWNDTSSD DLSGGVGGRG GGVGGGNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-65	24	138	4	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-65	24	138	4	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA18620

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ653163	1e-152	JQ653163.1 Pisum sativum elongated petiolule 1-like protein (APU) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003601210.2	4e-97	LOB domain-containing protein 25
Refseq	XP_024634900.1	4e-97	LOB domain-containing protein 25
Refseq	XP_024634901.1	4e-97	LOB domain-containing protein 25
Refseq	XP_024634902.1	4e-97	LOB domain-containing protein 25
Refseq	XP_024634903.1	4e-97	LOB domain-containing protein 25
Refseq	XP_024634904.1	4e-97	LOB domain-containing protein 25
Swissprot	Q9FML4	9e-72	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2K3NB25	1e-144	A0A2K3NB25_TRIPR; Protein lateral organ boundaries-like
STRING	AES71461	2e-96	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	3e-75	LBD family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA18620

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]