PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18703
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 472aa    MW: 55101.1 Da    PI: 9.9875
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18703genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507e-164996148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g WTteEd++l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA18703 49 KGTWTTEEDKKLIAYVTRYGCWNWRQLPKFAGLERCGKSCRLRWLNYL 96
                               799*****************99************************97 PP
2Myb_DNA-binding50.35.5e-16102146147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg+++++E+e +++++++lG++ W  Ia+ ++ gRt++++k++w++ 
  Tp57577_TGAC_v2_mRNA18703 102 RGNFSQQEEETIIKLHQKLGNR-WIVIAANLP-GRTDNEIKNYWHTI 146
                                89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1784496IPR017930Myb domain
SuperFamilySSF466891.67E-2846143IPR009057Homeodomain-like
SMARTSM007178.8E-104898IPR001005SANT/Myb domain
PfamPF002492.0E-134996IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2250103IPR009057Homeodomain-like
CDDcd001671.09E-75196No hitNo description
PROSITE profilePS5129423.50797151IPR017930Myb domain
SMARTSM007174.3E-15101149IPR001005SANT/Myb domain
PfamPF002491.4E-14102146IPR001005SANT/Myb domain
CDDcd001673.55E-9104147No hitNo description
Gene3DG3DSA:1.10.10.604.2E-25104151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MQSFAGSSIF HILLNIKCTT HNHTFILRNR IARENMMRTS FCEKNGLRKG TWTTEEDKKL  60
IAYVTRYGCW NWRQLPKFAG LERCGKSCRL RWLNYLKPGI KRGNFSQQEE ETIIKLHQKL  120
GNRWIVIAAN LPGRTDNEIK NYWHTILKKR VMKNSMSDAK CGTRKAKVSE SNDHPTMEAE  180
ASKIDCVLEN NSSHNISNPL SSKSSSSEFS CITMDSAATK ISYENSLFDD NDIPFMNXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXKFLVV K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-25261514128MYB TRANSFORMING PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18703
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1654301e-46AC165430.3 Medicago truncatula chromosome 2 BAC clone mth2-67a21, complete sequence.
GenBankAC2255131e-46AC225513.4 Medicago truncatula clone mth2-96m13, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-53myb domain protein 14