PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18747
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 213aa    MW: 23634.3 Da    PI: 4.8067
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18747genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1754103255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa a++ a+++++g
  Tp57577_TGAC_v2_mRNA18747  54 LYRGVRMRH-WGKWVSEIREPKK---KSRIWLGSFPTPEMAAIAHDVAAQAIKG 103
                                69****999.**********854...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-1153103IPR001471AP2/ERF domain
CDDcd000181.62E-3253113No hitNo description
Gene3DG3DSA:3.30.730.102.6E-3054112IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2154112IPR016177DNA-binding domain
SMARTSM003805.3E-3754117IPR001471AP2/ERF domain
PROSITE profilePS5103221.74654111IPR001471AP2/ERF domain
PRINTSPR003673.2E-95566IPR001471AP2/ERF domain
PRINTSPR003673.2E-97793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
LSISNIYSLV FSPKNMEQVS VSMDNEIELT TSISSSIENN KTKPKSDNNG KHPLYRGVRM  60
RHWGKWVSEI REPKKKSRIW LGSFPTPEMA AIAHDVAAQA IKGSSAYLNF PELAEHLPRP  120
ATNSPKDIQA AAKAASMDFR HEAQAQAHDL QESSNSSLTD EDDMFYDLPD LLLDTNNNST  180
TELYYSSMPW LAAGAEYSNS GFGLDEPLPW EP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1650111363ATERF1
3gcc_A1e-1650111363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18747
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611338.17e-87ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2K3LVL21e-144A0A2K3LVL2_TRIPR; Ethylene-responsive transcription factor erf034-like protein
STRINGAES942963e-86(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]