PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18819
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WOX
Protein Properties Length: 187aa    MW: 20830 Da    PI: 10.2364
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18819genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.6e-203091257
                               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               ++R+t+t++q+++L++l++    r psae++++++++l    +++ ++V++WFqN++a+e++
  Tp57577_TGAC_v2_mRNA18819 30 STRWTPTTDQIRILKDLYYTngIRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 91
                               58*****************7457*************************************97 PP
2Wus_type_Homeobox114.94e-372993265
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Tp57577_TGAC_v2_mRNA18819 29 SSTRWTPTTDQIRILKDLYYtNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 93
                               789***************9989*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-8891IPR009057Homeodomain-like
SuperFamilySSF466892.22E-122397IPR009057Homeodomain-like
PROSITE profilePS5007110.92692IPR001356Homeobox domain
SMARTSM003891.1E-52896IPR001356Homeobox domain
PfamPF000462.3E-173191IPR001356Homeobox domain
CDDcd000861.68E-63193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEQPQQQNQN EEAGGGGSSG KGGYMSRQSS TRWTPTTDQI RILKDLYYTN GIRSPSAEQI  60
QRISARLRQY GKIEGKNVFY WFQNHKARER QKKRFTSDVN NVVLPTIQRS TPNNNVISSA  120
NWKVPDHDHQ QQHVNVLTNH SNHNISSSGL STASCSSAEM ATLGQIGNYG YGTVPMEKSF  180
RVSLGL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18819
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4776811e-136FJ477681.1 Medicago truncatula WUSCHEL (WUS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612158.17e-90protein WUSCHEL
SwissprotQ6YBV17e-55WUS_ANTMA; Protein WUSCHEL
TrEMBLA0A2K3LAP01e-130A0A2K3LAP0_TRIPR; Protein WUSCHEL-like
TrEMBLA0A2K3N8B71e-132A0A2K3N8B7_TRIPR; Protein WUSCHEL-like (Fragment)
STRINGAES951163e-89(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-41WOX family protein