PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18846
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 341aa    MW: 36083.1 Da    PI: 10.0015
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18846genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.3e-0777101226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                k ++C  f+ t  C++G++C+F H 
  Tp57577_TGAC_v2_mRNA18846  77 KSKPCTKFFSTSGCPFGESCHFLHH 101
                                7789********************6 PP
2zf-CCCH25.52.2e-08142167227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                k ++C+ f     Ck+Gd+C+FaHg+
  Tp57577_TGAC_v2_mRNA18846 142 KSRICNKFNTAEGCKFGDKCHFAHGE 167
                                6799********************96 PP
3zf-CCCH32.51.5e-10310334126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                +kt+lC +f + G C +G+rC+FaHg
  Tp57577_TGAC_v2_mRNA18846 310 FKTKLCENFTK-GSCTFGERCHFAHG 334
                                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.03375102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.00975103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-676102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-877101IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-577101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-13138171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-7139171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188140168IPR000571Zinc finger, CCCH-type
SMARTSM003560.0071142167IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.14E-15200282IPR004088K Homology domain, type 1
SMARTSM003223.9E-11209279IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.109.8E-16209278IPR004088K Homology domain, type 1
PROSITE profilePS5008414.655210274IPR004088K Homology domain, type 1
CDDcd001056.13E-14212275No hitNo description
PfamPF000131.6E-11212275IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.1E-14305339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-8309339IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-7309335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183309336IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8310334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
LLGLGLGFYS LPSSPNLHYR SLSCCRNLLL VLPILRSGSR SMDIRKRGRP EHGFNTNGGF  60
KKSRQEMQSL STGVGSKSKP CTKFFSTSGC PFGESCHFLH HVPGGYNAAA QMMNLTPAAA  120
PAPRNVAPPP HVPNGSAPSA VKSRICNKFN TAEGCKFGDK CHFAHGEWEL GKPVALSFDD  180
HRGMGPPNVG RFGGHRMEPP PGPTTSFGAN ATAKISVEAS LAGAIIGKGG VNSKQICRQT  240
GAKLAIREHE ADPNLRNIEL EGTFEQIKDA SNMVKDLLLT LQMSAPPKTS QGGERGGGPG  300
GAPGHHGSNF KTKLCENFTK GSCTFGERCH FAHGAADLRK *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18846
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350856.10.0zinc finger CCCH domain-containing protein 31 isoform X1
SwissprotQ7F8R01e-111C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2Z6LYN30.0A0A2Z6LYN3_TRISU; Uncharacterized protein
STRINGGLYMA19G32910.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-86C3H family protein