PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18922
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 613aa    MW: 68683.2 Da    PI: 9.529
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18922genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3672.8e-21139240199
                                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                f k+lt+sd+++ g ++ p+++ae+       +g++++ +++  +d +g+ W +k+ yr++++r++lt+GW+ Fv+++++ +gD
  Tp57577_TGAC_v2_mRNA18922 139 FAKTLTQSDSNNGGGFSCPRHCAETLfpsldySGNPPS-QDIYPKDVHGEIWPFKHVYRGTPKRHLLTTGWSPFVSDKKIVSGD 221
                                89*********************999*****9656554.59******************************************* PP

                                EEEEEE-SSSEE..EEEEE-S CS
                         B3  79 fvvFkldgrsefelvvkvfrk 99 
                                ++vF   +++++ l+v+++r+
  Tp57577_TGAC_v2_mRNA18922 222 SIVFV--RTENGDLHVGLRRA 240
                                *****..4588999****996 PP
2Auxin_resp93.72.9e-31312393283
                 Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                +++ +++++F+vvY+Pra+t+eF vk++ + kal+++++ GmRfkma+eteds ++++  Gtvv+v+++dp  Wp+S Wr L+
  Tp57577_TGAC_v2_mRNA18922 312 VKRGTNMEPFDVVYYPRAGTPEFFVKISLIGKALQIRWCHGMRFKMAIETEDSTRISWfVGTVVSVQASDP-AWPESFWRFLQ 393
                                66778999***************************************************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-34130245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-28134242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-18138239No hitNo description
PROSITE profilePS5086312.294139241IPR003340B3 DNA binding domain
SMARTSM010194.4E-18139241IPR003340B3 DNA binding domain
PfamPF023629.2E-19139240IPR003340B3 DNA binding domain
PfamPF065071.8E-24315393IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MKAKRKGGNL GLNEMNKESK TKMRDLNRGV DPQLWHAIAG GMVQMPEVNS KIFYFPQGHA  60
EHACELVNFS AHSIIPHKIP SLIPCRVESI KYMADPETDE VFTKLRLVPL HISQVRFDDD  120
DGGVGGIGVS ETKDKHQCFA KTLTQSDSNN GGGFSCPRHC AETLFPSLDY SGNPPSQDIY  180
PKDVHGEIWP FKHVYRGTPK RHLLTTGWSP FVSDKKIVSG DSIVFVRTEN GDLHVGLRRA  240
KRKRDVRPDP SSEMKPGSGI GIRPDLPYGV FTSYSGEENN KLRRNGKGNG LRISDGMMGR  300
GKVKAQEVIE AVKRGTNMEP FDVVYYPRAG TPEFFVKISL IGKALQIRWC HGMRFKMAIE  360
TEDSTRISWF VGTVVSVQAS DPAWPESFWR FLQVEWDEPE LLKNLKRVNP WQVEIVSNMP  420
SIPLSPYVPP RKKLRLPQHP NYPLDGQFSM PTFPNNFLSP NIPIFHLPGT TPVGMQGARH  480
PHFSFSSSDF HLNKFPLGLF KPSFQQPFNH TATTSMTVPY NNTMLQKPTT SENASCPLTS  540
TQSSEKSDHV KPSHLMLFGQ KITIENKISS NTTADAGNES IEKKMTNNFS DLHLQGLPKC  600
SSGERFELNH KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-763041451388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237244RRAKRKRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18922
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625181.10.0auxin response factor 18
RefseqXP_024630427.10.0auxin response factor 18
TrEMBLA0A2K3PMI70.0A0A2K3PMI7_TRIPR; Auxin response factor
STRINGAES818530.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-164auxin response factor 16