PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18940
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 127aa    MW: 14483 Da    PI: 9.3772
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18940genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000312343121
                               EEETTTTEEESSHHHHHHHHH CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                               y C  C + F+++  L+ H+r
  Tp57577_TGAC_v2_mRNA18940 23 YLCRVCERAFTSNRALNGHMR 43
                               56******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-81949No hitNo description
Gene3DG3DSA:3.30.160.602.3E-82045IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8012350IPR007087Zinc finger, C2H2
SMARTSM003550.00892345IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-62345IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
LLINFSINST IQTLXXQQQE KPYLCRVCER AFTSNRALNG HMRCHGSKKG TSPFLTCQDA  60
IDLSRFLPPK TYKTRQRSKR FVIDDDVREV AQSLLDMSCG KSLYFDADNH DNNGKRLKLS  120
DEKARC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479RQRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6M8M78e-22A0A2Z6M8M7_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15177311