PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18951
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 366aa    MW: 39970.1 Da    PI: 6.7291
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18951genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-10167219557
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                                kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  ++    
  Tp57577_TGAC_v2_mRNA18951 167 KRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTT 219
                                9*****************************************99988876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.6E-16163227IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.588165228IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.41E-10167218No hitNo description
PfamPF001702.8E-9167222IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-8167221No hitNo description
CDDcd147033.76E-24168217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQHQSSNPNP NSNPNPHNAN TASQLPPPVP PPSTTATTSA GKSSLFAHSS GNASSHHRRA  60
HSEVNFRLPD DMMDLSPSDP FTGGSSTASL DEIGSEDDLF STYIDMDKLG DAGADLVGND  120
VPEKNPVRPR HRHSSSVDGS SSFGEIMDGK KAMPPDKLAE LWSIDPKRAK RILANRQSAA  180
RSKERKARYI HELERKVQTL QTEATTLSAQ LTLYQRDTTG LSTENTELKL RLQAMEQQAH  240
LRDALNDALK KEVERLKVAT GDIMSHTQSF NLGMHQMQFT ESNYAPIPPQ PGPSNHRNTQ  300
LPLFGHSPSS MQSHQLHQTN SLSFSELLQN DQIGRFQGLD ISSKGTTVVK SEDPSLSASE  360
SSTTY*
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18951
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8224660.0AY822466.1 Pisum sativum AT-rich element binding factor 1 (ATF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616032.10.0transcription factor RF2b
SwissprotO228733e-98BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A2K3PGW40.0A0A2K3PGW4_TRIPR; Transcription factor RF2b-like protein
STRINGAES989900.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.13e-85bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]