PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19008
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 231aa    MW: 25918.5 Da    PI: 9.4685
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19008genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001697119123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C+ C++ Fs+   L  H++ H
  Tp57577_TGAC_v2_mRNA19008  97 FSCHFCKRQFSTLQALGGHQNAH 119
                                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.9E-493123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.18E-694125No hitNo description
PROSITE profilePS5015711.07497124IPR007087Zinc finger, C2H2
PfamPF139121.1E-597121IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MASKSSSNIT SQDQGDSSHT KNVWNKKENE QDQSSNSNSN KSIDFVKLSK EDSVCRSKVH  60
EYEFFSPIQV GSSSYPDNNN EGENENNNEK NSESKSFSCH FCKRQFSTLQ ALGGHQNAHK  120
AERALEKQRR QKYDDGASSL GQPRFNPYFS YPSTLFPPYN YRALGVRMES MIRKPAYFNP  180
KVIHNSFGYG HNAICLQETL HPSLVSMKNN IKGGNSRVGI LSINGGATTS R
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19008
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458912.11e-92myb-like protein A
TrEMBLA0A2K3LZQ41e-167A0A2K3LZQ4_TRIPR; Zinc finger protein
STRINGXP_004499809.12e-88(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-14C2H2 family protein