PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA19094

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NF-YC

Protein Properties

Length: 85aa MW: 9328.91 Da PI: 8.4894

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA19094	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	44.9	2.5e-14	15	79	13	74
NF-YC 13 atdfknhelPl...arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtl 74 f+ +++Pl arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ Tp57577_TGAC_v2_mRNA19094 15 LGVFAATKMPLsykARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTM 79 456888999995556*************************************9998887777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.73E-12	28	84	IPR009072	Histone-fold
Pfam	PF00808	1.1E-16	28	84	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.1E-21	29	84	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
NSDCKQQCKN EDSSLGVFAA TKMPLSYKAR IKKIMQADED VGKIALAVPV LVSKALELFL 60 QDLCDRTYEI TLQRGAKTMN ALHL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-17	29	84	15	70	Transcription Regulator NC2 alpha chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA19094

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ918300	3e-74	JQ918300.1 Medicago truncatula nuclear transcription factor Y subunit C8 (NF-YC8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008245472.1	2e-32	PREDICTED: dr1-associated corepressor homolog, partial
Refseq	XP_015876122.1	2e-32	dr1-associated corepressor isoform X2
Refseq	XP_028192968.1	7e-34	dr1-associated corepressor-like
Refseq	XP_028192969.1	7e-34	dr1-associated corepressor-like
Swissprot	Q14919	2e-16	NC2A_HUMAN; Dr1-associated corepressor
TrEMBL	A0A0B2PUJ1	2e-31	A0A0B2PUJ1_GLYSO; Dr1-associated corepressor
STRING	GLYMA06G04161.1	7e-34	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-32	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA19094