PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19225
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 313aa    MW: 35319.1 Da    PI: 4.8119
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19225genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_159.47.6e-19225285363
                                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                ++++er++q+NRe+A+rsR RK++e+eeL +k+++L+ eN+ L ++l  l++e+ +l++e+
  Tp57577_TGAC_v2_mRNA19225 225 DIRKERKRQSNRESAKRSRMRKQQECEELCKKIDTLKDENSVLTQRLVALSEECMELTNEN 285
                                689******************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-15221282No hitNo description
SMARTSM003381.8E-16223287IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.668225288IPR004827Basic-leucine zipper domain
PfamPF001701.3E-15225285IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.94E-11226283No hitNo description
CDDcd147025.06E-20228279No hitNo description
PROSITE patternPS000360230245IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGKKEESNHP FGRPYNFMVP QDQTPNNPML PHWTTSMQSY YNLGSTPTPI YNPFPAGPYL  60
YHQYMWPNQV QANNALLHDA LHDPARLSNK PHIAEDAALA FSEVVQRNFG ERNPNFNKLS  120
RNLQPLRLTS GVSRECENQS LAPKIDRDGT STSAASGSKK SSDENQDDTD KDFPLSKKQK  180
PDLITGDENP SGLTQNLETV VKESDADVDG DGDADTQLKF TEGDDIRKER KRQSNRESAK  240
RSRMRKQQEC EELCKKIDTL KDENSVLTQR LVALSEECME LTNENDSIQE ELITKYGRES  300
IEDLLDLMKP PA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19225
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466739.11e-144G-box-binding factor 1
TrEMBLA0A2K3P3W50.0A0A2K3P3W5_TRIPR; G-box-binding factor 1-like protein (Fragment)
STRINGXP_004498193.11e-133(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149401013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.26e-19G-box binding factor 1