PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA193

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 172aa MW: 20437.9 Da PI: 10.087

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA193	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.7	1.1e-19	77	168	1	88
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 +fY +Y+k GF +rk+ +++ k ++ i++++fvC+k+g+r++ + +++r++r trt+C a+l+v +k ++k++v+ +e Tp57577_TGAC_v2_mRNA193 77 EFYYQYGKCKGFAIRKRDVRRRgpKGSEIIVMNEFVCNKHGSRNKMHLIrVDRKREHRRLTRTECGARLRVLYKKnKDKYVVSLFE 162 6****************99998999999********999876657889999**********999889***** PP FAR1 83 leHnHe 88 + HnHe Tp57577_TGAC_v2_mRNA193 163 ETHNHE 168 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-17	77	169	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MHLQKLMPNI IVVKIVRMEM VMLYRLQIKV QMMKIAHNDD DEDAFQATAG DKFLMVDSMT 60 VEEIRALEFV NVAEAYEFYY QYGKCKGFAI RKRDVRRRGP KGSEIIVMNE FVCNKHGSRN 120 KMHLIRVDRK REHRRLTRTE CGARLRVLYK KNKDKYVVSL FEETHNHEST PP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA193

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024631935.1	4e-46	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2K3LXK3	2e-50	A0A2K3LXK3_TRIPR; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3290	7	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-11	far-red elongated hypocotyls 3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA193