PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA1931

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 233aa MW: 26577.2 Da PI: 5.7624

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA1931	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.6	6.1e-15	79	165	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k + +s+v + +l lp +f+ eh k+ +tlede+ +++v + +++g+ l++GW+ F+ +n+L++ D+++F+l+ Tp57577_TGAC_v2_mRNA1931 79 FIKSMNRSHVYSCFWLGLPSRFCVEHFPKT--VYNMTLEDENASEYDVVY--IGSRGG--LSGGWRAFALENKLDDCDTLIFELI 157 899999******************7554..457***********..777777..9*********************9 PP SSSEE..EEE CS B3 86 grsefelvvk 95 + ++f ++ Tp57577_TGAC_v2_mRNA1931 158 EPTRF--KIY 165 87777..444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.82E-20	72	168	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.4E-18	72	168	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.95E-22	77	168	No hit	No description
Pfam	PF02362	3.6E-13	79	165	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.701	79	170	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-17	79	170	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MHLCTSKQLC DQSFSQDYVL FLKNLGADFF EVFVRLKLIL SASARPLDEI KEAIEQEKNC 60 AYEVAEAIQI NLQSSKPSFI KSMNRSHVYS CFWLGLPSRF CVEHFPKTVY NMTLEDENAS 120 EYDVVYIGSR GGLSGGWRAF ALENKLDDCD TLIFELIEPT RFKIYIVKAF PNIDEQEEEE 180 ENNTLVQEIM HTSKVTKVSK TSSNRGSKSK KTKMQKYVTE TKSSGVNPNK FE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA1931

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490734.1	2e-80	ankyrin repeat domain-containing protein 12-like
Refseq	XP_004490735.1	2e-80	ankyrin repeat domain-containing protein 12-like
Swissprot	Q5KQI4	6e-46	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A1S2XMV7	5e-79	A0A1S2XMV7_CICAR; ankyrin repeat domain-containing protein 12-like
TrEMBL	A0A2Z6MC87	2e-81	A0A2Z6MC87_TRISU; Uncharacterized protein
STRING	XP_004490734.1	8e-80	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12433	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	7e-47	B3 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA1931

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]