PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19378
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 392aa    MW: 43189 Da    PI: 9.3802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19378genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20203252255
                        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa+a+++a+++++g
  Tp57577_TGAC_v2_mRNA19378 203 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAARAYDEAALRFRG 252
                                8********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-32202261IPR001471AP2/ERF domain
CDDcd000183.75E-22203262No hitNo description
SuperFamilySSF541711.57E-22203261IPR016177DNA-binding domain
SMARTSM003803.3E-36203266IPR001471AP2/ERF domain
PROSITE profilePS5103225.62203260IPR001471AP2/ERF domain
PfamPF008478.9E-14203252IPR001471AP2/ERF domain
PRINTSPR003671.3E-11204215IPR001471AP2/ERF domain
PRINTSPR003671.3E-11226242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MCMLKVANSR DKVVIKRENI NDSPTLSTEM IFPGLNRDRE MSAMISALTH IVSGDVPNTN  60
VGDNNIHYNA IDERLGFTTN INMSSSSTTP SLSSSSNYVT NSSLKRTRDE DEDRSFGDQF  120
LLQGGYSPAL PTIRSGYIYG SVMCPLNTKL IILIIHVVIV TDAESSRNRT TTTRVTTARE  180
MGNAVYEYKR TENVVREGEE KRKYRGVRQR PWGKWAAEIR DPFKAARVWL GTFETAEAAA  240
RAYDEAALRF RGNKAKLNFP ENVTLRQPPT TSSTNQSNVL NSNSLNSIVS ITTSTDPVVH  300
TRPFTSSQPS TNFYDRFQFP GIPSTRNVYD DNVILTSTMA SHLQSSSSSA SSLSSPSAFA  360
SSMQANTSVS SFYSTQLPPW SASDHSSSSS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-24202263163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19378
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0196050.0CU019605.7 M.truncatula DNA sequence from clone MTH2-6C22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602514.11e-144ethylene-responsive transcription factor ERF110
TrEMBLA0A2K3PBC81e-170A0A2K3PBC8_TRIPR; Ethylene-responsive transcription factor abr1-like protein
STRINGAES727651e-144(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-26ethylene response factor 110