PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA19408

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 327aa MW: 36640.9 Da PI: 4.321

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA19408	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.4	5.5e-37	51	105	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++ Tp57577_TGAC_v2_mRNA19408 51 PNCPRCASTHTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRR 105 58**************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	36	105	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-31	51	105	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.341	51	105	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MFQQRHNNIS STELDQMLHM LTSSNSSIPM PFPTTSMDSN SKWKPNIEIA PNCPRCASTH 60 TKFCYYNNYS LSQPRYFCKG CRRYWTKGGS LRNVPVGGGC RKTRRGKAVR NSQNSDRLSA 120 NGSVDDGDRQ QNQNDGSRDI DMAVVFAKFL NQNPNSTTTN TTHHGDEELE IESEPNNSSS 180 NNVNNLSTPD SVETDNDAVV QSQNYPFDQE LSLSGIEYDQ FEGLLGVDED VVQQDVLWSE 240 SDAMNMMVSS SNNYTWQQPS TMMQMELDYS MSLNEDGGIN HDQLLPLNVN SNSTNVNLIS 300 DQSWMSNSWD SFDLATMEIF SSSSRP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA19408

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003602157.1	1e-151	dof zinc finger protein DOF1.2
TrEMBL	A0A2K3LFK8	0.0	A0A2K3LFK8_TRIPR; Dof zinc finger protein
STRING	AES72408	1e-151	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	1e-41	Dof family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA19408