PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19453
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 166aa    MW: 18723.7 Da    PI: 6.5026
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19453genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS153.22.5e-47815665220
                       GRAS  65 ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148
                                ++s+t  + ss+ + ++k+f+e++P+lkfs+l++Nq I+e++e e+ vHiiD+  s+++QW++L+q++ +R +gpp+++iTg++
  Tp57577_TGAC_v2_mRNA19453   8 NSSKT--SLSSDDMLVQKYFYELCPFLKFSYLITNQSIVESMECEKVVHIIDLHCSEPAQWINLIQTIKKRHGGPPHIKITGIH 89 
                                33333..3599999********************************************************************** PP

                       GRAS 149 spesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220
                                +    +ke l ++   L+  A++l+ p++fn+ ++++led+++e+L vk+g+a+a+ ++lqlh+ll+ + ++
  Tp57577_TGAC_v2_mRNA19453  90 A----KKEVLDQMSFHLTTEARNLDFPLQFNP-IVSKLEDVDFENLPVKTGDAVAITSALQLHSLLATDDKM 156
                                *....9**************************.7999****************************9877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.3951165IPR005202Transcription factor GRAS
PfamPF035148.3E-458156IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
LLHFSSLNSS KTSLSSDDML VQKYFYELCP FLKFSYLITN QSIVESMECE KVVHIIDLHC  60
SEPAQWINLI QTIKKRHGGP PHIKITGIHA KKEVLDQMSF HLTTEARNLD FPLQFNPIVS  120
KLEDVDFENL PVKTGDAVAI TSALQLHSLL ATDDKMFKLS IYVSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-2223140100217Protein SCARECROW
5b3h_A4e-222314099216Protein SCARECROW
5b3h_D4e-222314099216Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19453
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9673041e-155CT967304.5 M.truncatula DNA sequence from clone MTH2-36C8 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513385.18e-91scarecrow-like protein 3
SwissprotQ9LPR86e-53SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2Z6MW563e-98A0A2Z6MW56_TRISU; Uncharacterized protein
STRINGXP_004513385.13e-90(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.18e-53scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]