PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19483
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 573aa    MW: 66324.8 Da    PI: 5.0195
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19483genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-1952106357
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                k++++t+eq++ Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Tp57577_TGAC_v2_mRNA19483  52 KKRKLTDEQVNLLEQNFTNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKN 106
                                56699************************************************95 PP
2HD-ZIP_I/II109.32.6e-3551136186
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kkr+l++eqv+lLE++F++e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+++lE++y++Lk+ +++ + e++ Le+ev
  Tp57577_TGAC_v2_mRNA19483  51 NKKRKLTDEQVNLLEQNFTNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNRKLEEEYNSLKKFHESTMLEKCLLETEV 134
                                59*******************************************************************************998 PP

                HD-ZIP_I/II  85 ee 86 
                                  
  Tp57577_TGAC_v2_mRNA19483 135 YL 136
                                65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.70247107IPR001356Homeobox domain
SMARTSM003894.9E-1850111IPR001356Homeobox domain
SuperFamilySSF466895.56E-1851115IPR009057Homeodomain-like
PfamPF000461.1E-1652106IPR001356Homeobox domain
CDDcd000863.45E-1652108No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2054114IPR009057Homeodomain-like
PRINTSPR000317.7E-57887IPR000047Helix-turn-helix motif
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
PRINTSPR000317.7E-587103IPR000047Helix-turn-helix motif
SuperFamilySSF561124.99E-67215503IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.202.1E-25218342No hitNo description
SMARTSM002202.5E-57222497IPR000719Protein kinase domain
PROSITE profilePS5001141.955222499IPR000719Protein kinase domain
PfamPF000694.2E-51225486IPR000719Protein kinase domain
CDDcd139991.47E-78228490No hitNo description
PROSITE patternPS001070228250IPR017441Protein kinase, ATP binding site
PRINTSPR001094.2E-12308321IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
Gene3DG3DSA:1.10.510.103.3E-39343487No hitNo description
PRINTSPR001094.2E-12346364IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS001080352364IPR008271Serine/threonine-protein kinase, active site
PRINTSPR001094.2E-12419441IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PRINTSPR001094.2E-12461483IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MYNTMNHQDQ MMLMSQLFPS AYNEVIPQQG EKKPRRRRTK KIKGDIANEM NKKRKLTDEQ  60
VNLLEQNFTN EHKLESERKD KLAMELGLDP RQVAVWFQNR RARWKNRKLE EEYNSLKKFH  120
ESTMLEKCLL ETEVYLLVFY RINVIRPMVE EEDEEVEGGH FSLGKDLIEN PHSLPTSDTV  180
LHPIRLPFGR SSQNIEDIRS VDDDDGFVFH IDRSLLLDYT KLVVGDLIGK GGNSNVYNGW  240
YEDRPVAIKK VLLPETTDEA TLECKANFQR EVNLLSKIEH KNVIKLLKIF KFVMQFVAAS  300
DGPMILITEL MEGGSLQKHL KNIYPITLSL EQCLSYALDI SQAMEYLHAN GIIHRDLKPG  360
NILLTKDQNH VKLADFGLAR DDICDEMTCE AGTYRYMAPE LMSKNPLPKG AKKSYDHKAD  420
VYSFALTLWS LIKNQIPFKD RKDLMAAYAT MNNIRPSLDE FPEEIVPLLQ SCWVEDPKLR  480
PEFKEITGTL IRILQNIYTT KINALASIKQ DVEANGESEA ESSKENKNLL KRDVEANLMI  540
ILQSFSRKFE FCLLKEEEEE EEEEEEEEEE GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2eva_A7e-342164954263TAK1 kinase - TAB1 chimera fusion protein
2yiy_A7e-342164954263MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7, TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN 1
5j9l_A7e-342164954263Mitogen-activated protein kinase kinase kinase 7,TGF-beta-activated kinase 1 and MAP3K7-binding protein 1
5v5n_A7e-342164954263Mitogen-activated protein kinase kinase kinase 7/TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 chimera
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13554RRRTKKIKGDIANEMNKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19483
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512221.11e-146serine/threonine-protein kinase HT1-like
TrEMBLA0A2Z6LM221e-159A0A2Z6LM22_TRISU; Uncharacterized protein
STRINGXP_004512221.11e-146(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-43homeobox protein 40