PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19525
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 367aa    MW: 42397 Da    PI: 9.4844
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19525genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.6e-10255337176
                                EEEE-..-HHH.HTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                         B3   1 ffkvltpsdvl.ksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                f+k+l++sd + +++rl l k ++e++       g++ ee+++++++d +g+++++k++++ ++  yvl +GWk F  ++   +
  Tp57577_TGAC_v2_mRNA19525 255 FEKILSTSDLNvALNRLFLEKGHVEKYflpllkeGEDLEEGIDVVVYDMQGQTFNMKFKFWSGK-FYVLNGGWKTFFLSHSFLA 337
                                89999999965266******************997777799*****************999886.9**********99988663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1585731.1E-351134No hitNo description
CDDcd117104.19E-453134No hitNo description
PfamPF059161.7E-449116IPR021151GINS complex
Gene3DG3DSA:2.40.330.104.6E-14255357IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-13255358IPR015300DNA-binding pseudobarrel domain
CDDcd100174.47E-11255363No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MYGRKACQLV KEFASGEKGQ LTPFNNDLFD QVVAECSQHH GELQSLIRKM QEEGLDVQTA  60
RNADHYGALI HLFSIVRNKR CLTAYVYNRA ETIRNLLWKI GPVIPKEIEE KLNHWEEEYF  120
KKHSAALKSY MSKVLLKEIK NMEIFKNYNI MKRKRSNTPK MKRRVCALHS MDFSSDEYEA  180
ADGLVLLQTL FQKKNIVRNL KITFGGKRLC KRSGNNNVHP APQMNVPNVV MGNEYNPPTI  240
LGVSNHNILG CCKPFEKILS TSDLNVALNR LFLEKGHVEK YFLPLLKEGE DLEEGIDVVV  300
YDMQGQTFNM KFKFWSGKFY VLNGGWKTFF LSHSFLANQD HITVWMFRHS ETDNLCFALS  360
VRRVQT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19525
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3M0411e-164A0A2K3M041_TRIPR; Ap2 b3-like transcriptional factor family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.16e-22B3 family protein