PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA19611

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 278aa MW: 28879.8 Da PI: 10.0925

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA19611	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.1	3.3e-37	22	81	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + ++cprC+s ntkfCy+nnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ Tp57577_TGAC_v2_mRNA19611 22 QPPQECPRCQSFNTKFCYFNNYSLNQPRYFCKSCRRYWTQGGTLRNVPVGGGSRKGKRAK 81 66789**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-24	10	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-32	24	79	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.332	25	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEQGGDGGKR GEMNRQLHPH PQPPQECPRC QSFNTKFCYF NNYSLNQPRY FCKSCRRYWT 60 QGGTLRNVPV GGGSRKGKRA KNSPSTSTSN SSGNSSVSQP MLPQPTVQST MAAMAKDSAL 120 SLTSFSSAAP FYQGGGGVGY MSSFAAFNQS LNPNLSAHNF DHPSLNLGGV GSSNLSLLQG 180 FNVAAALGNS SQGPNRPSMQ QYYQMAGNGG MFTSQQQGLN LIPSSTTSNA SVAAASNIWP 240 QSFMNGTLGT TSIPSGNSDR NGSGAGGSGS SVAGAGSP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA19611

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003593604.1	8e-76	dof zinc finger protein DOF5.6
TrEMBL	A0A2K3PLD6	0.0	A0A2K3PLD6_TRIPR; Dof zinc finger protein
STRING	AES63855	3e-75	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	4e-31	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA19611