PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA19678

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 152aa MW: 17945.1 Da PI: 7.9533

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA19678	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.1	3.3e-09	63	105	1	44
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreee 44 +fY+ YA+ GF vrk+ k+ r+++i++r++ C+k g+++ + Tp57577_TGAC_v2_mRNA19678 63 SFYKLYAHFHGFAVRKDDVKRD-REKKIYMRQLLCNKAGTSTGN 105 5***************9998.5666**********98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-7	63	106	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MSTYSETTVR LECDTDDEVE INSGNDFCSQ QGNENSNDYK CISDLTDDDI RGMEFSTETE 60 ATSFYKLYAH FHGFAVRKDD VKRDREKKIY MRQLLCNKAG TSTGNSIREA FTRHILTPFY 120 MREHKVYLDI PRLRLRWRRW SVRQIIASYR K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA19678

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020209499.1	3e-17	protein FAR1-RELATED SEQUENCE 5-like, partial
TrEMBL	A0A2K3LQE0	4e-65	A0A2K3LQE0_TRIPR; Uncharacterized protein
STRING	AES71679	4e-28	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9653	6	34

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA19678