PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19693
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 75aa    MW: 8353.07 Da    PI: 4.1819
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19693genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.9e-102568146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               ++ ++++E+ l+  + ++ G + W++Ia +++ gRt++++  +w++
  Tp57577_TGAC_v2_mRNA19693 25 KLEFSADEEILITMVYNLVGEK-WSLIAGRIP-GRTAEEIEKYWNS 68
                               6789****************99.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7022070IPR017877Myb-like domain
SMARTSM007176.7E-72472IPR001005SANT/Myb domain
PfamPF002496.5E-92668IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-82770IPR009057Homeodomain-like
CDDcd001671.31E-62767No hitNo description
Gene3DG3DSA:1.10.10.601.5E-122869IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MADTESSSNN VSADSRDQKS SQDSKLEFSA DEEILITMVY NLVGEKWSLI AGRIPGRTAE  60
EIEKYWNSRY STSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19693
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2381136e-44KP238113.1 Lablab purpureus caprice and triptychon-like enhancer transcript variant X2 (etcl2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455622.11e-36transcription factor CPC
TrEMBLA0A2Z6NWZ71e-42A0A2Z6NWZ7_TRISU; Uncharacterized protein
STRINGXP_004515082.11e-35(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26923178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.16e-16MYB_related family protein