PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19740
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 255aa    MW: 28827.8 Da    PI: 9.9251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19740genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08156196954
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Tp57577_TGAC_v2_mRNA19740 156 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 196
                                699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-14148206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.30E-11149201No hitNo description
SuperFamilySSF474591.7E-14151206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-14153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-6157196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDVDIVKTSS DGSMDMISMM MQMEKFPDQF SEPFYNIPTT YQEIITTNNN TVPLFNQNAL  60
SSHSPQTLNN IDQNLHSNVN FQQHLNISPS TLQTNSSSFP YSNYSNSFDK KNSMAAMREM  120
IFRIAVMQPI HIDPESIRPP KRRNVKISKD PQSVAARHRR ERISEKIRIL QRLVPGGTKM  180
DTASMLDEAI HYVKFLKKQV QTLEQVGANN RSSQLSHNIG GGVMNNFNVN YSSLMMKGCQ  240
PFQMVGSTSK QLLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19740
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444313e-73AC144431.11 Medicago truncatula clone mth2-21i14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509135.13e-88transcription factor HEC1
SwissprotQ9SND41e-51HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2K3MYR00.0A0A2K3MYR0_TRIPR; Transcription factor HEC1-like protein
STRINGXP_004509135.11e-87(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]