PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19784
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 241aa    MW: 27173.8 Da    PI: 10.2143
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19784genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-2099149255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdp   + k  r++lg+f ta eAaka+++a+ +++g
  Tp57577_TGAC_v2_mRNA19784  99 HYRGVRRRP-WGKFAAEIRDP---NkKGSRVWLGTFETAIEAAKAYDKAAFQMRG 149
                                8********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.73E-3098157No hitNo description
Gene3DG3DSA:3.30.730.101.8E-3298157IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2299159IPR016177DNA-binding domain
SMARTSM003809.4E-3799163IPR001471AP2/ERF domain
PfamPF008472.7E-1499149IPR001471AP2/ERF domain
PROSITE profilePS5103224.02699157IPR001471AP2/ERF domain
PRINTSPR003672.3E-10100111IPR001471AP2/ERF domain
PRINTSPR003672.3E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEPQTFDSTF TFWPSNMLQI QNSFFETKNM VQTKTQTHVQ IHQTSFSKPP RSTSNLSNRK  60
PSLNITIPSI KKTLPQQKMI KSENANNTNE DNNNNNNKHY RGVRRRPWGK FAAEIRDPNK  120
KGSRVWLGTF ETAIEAAKAY DKAAFQMRGS KAIMNFPLDV ATDSIESSLS SCIKVGEKRQ  180
RDEGNYVEIN NSSNKQVKKE EGVSICPLTP SCWKGFWDTD VMGTIFSVPP LSPLSPLMGF  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-3298160163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19784
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467284.11e-129ethylene-responsive transcription factor ERF104
TrEMBLA0A072VI961e-127A0A072VI96_MEDTR; Ethylene response factor
STRINGXP_004513203.11e-104(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-40ERF family protein