PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19799
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 243aa    MW: 27827.8 Da    PI: 7.5926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19799genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-1267118255
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                +  hn+ Er RR++iN+ ++ +r+llP  +   + kKls  ++ +++ +YI +Lq
  Tp57577_TGAC_v2_mRNA19799  67 KLVHNASERDRRKKINNLYSSIRSLLPVsD---QMKKLSIPATITRVLKYIPELQ 118
                                678*************************66...9999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.10965117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-1066122No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1066131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-1466135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-967118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-771123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLAISPALFS TIGWPFEETI SHNHHLNHFY KDSSTTDQLF DINYQVEAEN STDPSQATSC  60
DLSMVKKLVH NASERDRRKK INNLYSSIRS LLPVSDQMKK LSIPATITRV LKYIPELQKQ  120
VEGLIKRKEE ILMRFSPQVD EVMISKESQR KKQSYNSGFV VSTSRLNDSE ITIQISCYTV  180
NKIPLSEILL CLENDGYFLL NVSSSQTFGG RDFYNLHLQV DKSQRLETDI LNEKLLSIME  240
KK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19799
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467291.11e-141transcription factor ORG2 isoform X3
TrEMBLA0A2K3MJN91e-160A0A2K3MJN9_TRIPR; Transcription factor ORG2-like protein (Fragment)
STRINGXP_004513200.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-58bHLH family protein