PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19802
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 192aa    MW: 21942.4 Da    PI: 6.6863
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19802genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.8e-12113157347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT+ E++ ++++ +  G+g+Wk I+r +  ++t+ q+ s+ qky
  Tp57577_TGAC_v2_mRNA19802 113 SWTEKEHKAFLKGLEAVGKGRWKHISRNFVITKTPTQVASHAQKY 157
                                7*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.516106162IPR017930Myb domain
SuperFamilySSF466897.03E-14109162IPR009057Homeodomain-like
SMARTSM007174.8E-9110160IPR001005SANT/Myb domain
TIGRFAMsTIGR015577.9E-15112160IPR006447Myb domain, plants
PfamPF002492.7E-10113157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-9113157IPR009057Homeodomain-like
CDDcd001672.75E-7113157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVNETKTYDS MNYDDDGERI VMLFGVNIAK KPAKVDDTIK NIMEDINSIH GDNKNEISIH  60
DTGESSDHEK MEREFEHQNE NENGNDDANN RVPELELAIG QSANHGKIKR VKSWTEKEHK  120
AFLKGLEAVG KGRWKHISRN FVITKTPTQV ASHAQKYYQR NEPIVHKTKR QSIFDIKLLD  180
DEHQNSKAFA A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19802
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6MI182e-86A0A2Z6MI18_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1686178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-23MYB family protein