PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA19806

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 248aa MW: 27736 Da PI: 8.3706

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA19806	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Tp57577_TGAC_v2_mRNA19806 80 FSCNYCQRKFYSSQALGGHQNAH 102 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.35E-6	77	108	No hit	No description
PROSITE profile	PS50157	11.427	80	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MDLLRSEPCS SHNLNILFSE KKQTENEEKK HLLDLSLPSN YPCDDESKQE LNLINCFDTE 60 TSMNSSSESN HGNELEPRIF SCNYCQRKFY SSQALGGHQN AHKRERTMAK RGHKAAVSLD 120 FEHRYSSLAS LPLHGSYNRS SSLGIQVHSS MVHKPSYQTP FFGLSRSRAQ NQWQKLPMYS 180 QQAIGNLASE TDGSSLASVI PTRSGRFSPT KVQDGLIGGY WLGNSATTTC LKTKQEELQK 240 LDLSLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA19806

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013465589.1	1e-126	zinc finger protein 1
TrEMBL	A0A2K3NC28	0.0	A0A2K3NC28_TRIPR; Zinc finger protein 3-like
STRING	XP_004486622.1	4e-94	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	3e-38	zinc finger protein 3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA19806