PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19892
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 455aa    MW: 50149.8 Da    PI: 6.2736
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19892genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-143482255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                y+G+r  +++g+Wv eIr+p++   + r++lg+f t+e+Aa+a++ a+++l+g
  Tp57577_TGAC_v2_mRNA19892 34 IYHGIR--SRSGKWVTEIREPRK---TNRIWLGTFSTPEMAAAAYDVAALALKG 82
                               589995..678*********854...49**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.76E-143391No hitNo description
Gene3DG3DSA:3.30.730.101.2E-243490IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-163491IPR016177DNA-binding domain
PROSITE profilePS5103219.2823490IPR001471AP2/ERF domain
SMARTSM003802.2E-253498IPR001471AP2/ERF domain
PfamPF008474.1E-83482IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
LTLLLKLQKY CNKVSLIPAF MSSSTSSSSK RHPIYHGIRS RSGKWVTEIR EPRKTNRIWL  60
GTFSTPEMAA AAYDVAALAL KGGDAVLNFP AYVGKYPVPA SNSSDDIRAA ATAAAELMKA  120
EAFNGAGFDI SPSYETEFLD EEAIFSMPRL MVEMAEGMLL SPPRMNPPPS EYMPEYYTLG  180
ESISNSALNL SVVTRSSDWI IDTGASDHMT CDPHIFTNFS PYCSKTVIIN ANGVKSPIEG  240
VGTVSLSPSL SIPDVLFVPT LNCNLISVSK LTKSHSCVAM FYPTHCFFQN MHTKEKIGSG  300
RHNEGLYYLE KVSQQTHKGA LAHLASTEPI LNMDLLTIDN TTSPDHNQLA QSSPRVQLDS  360
SEVTLDPFPT DRSIDEVDLV SDSEIDSVLN EINPCLHDTT NTPNTESTNI QYNLPPRSNR  420
GKPPVRYEPD LQSKVKYPIK FFQQKVKLNF HFHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3N8L61e-133A0A2K3N8L6_TRIPR; Uncharacterized protein
TrEMBLA0A2K3PDV11e-132A0A2K3PDV1_TRIPR; Retrovirus-related Pol polyprotein from transposon TNT 1-94
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-35ERF family protein