PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19938
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 366aa    MW: 41551.6 Da    PI: 5.2952
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19938genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.46.4e-35211122102
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k y+++ed++++++i ws+ g+sf++++ ++f+ ++Lp+yFkh+nf+SFvRQLn+YgFkk++ ++         weF++++
  Tp57577_TGAC_v2_mRNA19938  21 FLNKCYDMVEDRSTDSIIYWSQFGHSFIISNVDQFSLTLLPNYFKHNNFSSFVRQLNIYGFKKIDADH---------WEFANEN 95 
                                9****************************************************************999.........******* PP

                                XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                                F +g+k+ll++i+r+k+
  Tp57577_TGAC_v2_mRNA19938  96 FIRGQKHLLKNIRRRKH 112
                                **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.08E-3316110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-5317110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3517110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-3021110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MVKAASNDNG SVSSSSSVAP FLNKCYDMVE DRSTDSIIYW SQFGHSFIIS NVDQFSLTLL  60
PNYFKHNNFS SFVRQLNIYG FKKIDADHWE FANENFIRGQ KHLLKNIRRR KHPHGADQQK  120
ALPQKDNRGD EQSQEATNHS LWKEVENLKS DRNSLTQELV KHKQRLESSE SKLLLLSDRL  180
EGMEKHQQQM LSFLVMVVQC PGFLSQLLHP KENNWRLADA GNVLYQDDEP VSSDGMIIKY  240
TPPVAEKRKP VVPRSPAFDK KPEPEISADG LKDLCISSEF LKLLLDEKLS PLDNHSPFLV  300
PDFPDDGSWE KLFLGSPVLE NAEDTDHGNE EHTVSGLEME HTISAAPNER SAFEAMIIEM  360
ENTQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-231111019129Heat shock factor protein 1
5d5v_B1e-231111019129Heat shock factor protein 1
5d5v_D1e-231111019129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19938
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1533500.0AC153350.18 Medicago truncatula clone mth2-77l10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572041.10.0heat stress transcription factor A-8
TrEMBLA0A2Z6M2J70.0A0A2Z6M2J7_TRISU; Uncharacterized protein
STRINGXP_004503339.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.12e-75heat shock transcription factor A8