PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA20048

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 146aa MW: 16938.2 Da PI: 8.7546

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA20048	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72	1.4e-22	21	109	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 kf+ +Y+ ++GF vrk++++ s + +g t+ +fvC keg r+++k++ k+ ++r+etrt+C a++ +k++ ++w+v++++ Tp57577_TGAC_v2_mRNA20048 21 KFWVDYGGRMGFGVRKQYKHISkDGSGLATSCRFVCCKEGLRKPDKRD-FKTIKPRPETRTNCPARIGLKNM-GENWMVHDFVV 102 69*************9999834567899************99.99*****************.9****** PP FAR1 84 eHnHela 90 eHnH l Tp57577_TGAC_v2_mRNA20048 103 EHNHMLH 109 **996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-18	21	109	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MQEDWMPKQG MLFDNIDDAW KFWVDYGGRM GFGVRKQYKH ISKDGSGLAT SCRFVCCKEG 60 LRKPDKRDFK TIKPRPETRT NCPARIGLKN MGENWMVHDF VVEHNHMLHT QETTHMLSSQ 120 RKVSEIHCQQ IDLAXXXXXL GIYTP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA20048

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024632821.1	5e-64	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2Z6MJF1	2e-80	A0A2Z6MJF1_TRISU; Uncharacterized protein
STRING	AES87711	8e-55	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-15	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA20048